Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
(472 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical... 42 7e-04
AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical ... 42 7e-04
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 34 0.19
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 34 0.19
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 34 0.19
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 34 0.19
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z83112-4|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z70682-4|CAE46662.1| 187|Caenorhabditis elegans Hypothetical pr... 30 4.1
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 29 5.4
Z70682-3|CAA94582.2| 151|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 9.4
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 9.4
U80953-5|AAO61446.3| 317|Caenorhabditis elegans Dachsund transc... 29 9.4
U80953-4|AAB52555.2| 420|Caenorhabditis elegans Dachsund transc... 29 9.4
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 29 9.4
>AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical
protein Y24D9A.1b protein.
Length = 487
Score = 42.3 bits (95), Expect = 7e-04
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 100 PDLTRRSLKERLIQLLALKPFKK-PELYTRLSSEGIKDKERSAVNKILPQISLMKD---- 154
P L + S+K+R+I L+ + + E+Y +L S+G+ + E+ + KI + + +
Sbjct: 261 PQLMKHSIKKRIIHLIVTQKYSNWEEVYKKLKSDGLPE-EKDEIEKIRSCVEEVSETRPE 319
Query: 155 -NCYHLRRHIWNDVNEDWPFYTEEEK 179
+ LR ++V++ W F+ +EEK
Sbjct: 320 MSVMSLRTSFLSEVDQRWMFFNQEEK 345
>AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical
protein Y24D9A.1a protein.
Length = 670
Score = 42.3 bits (95), Expect = 7e-04
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 100 PDLTRRSLKERLIQLLALKPFKK-PELYTRLSSEGIKDKERSAVNKILPQISLMKD---- 154
P L + S+K+R+I L+ + + E+Y +L S+G+ + E+ + KI + + +
Sbjct: 261 PQLMKHSIKKRIIHLIVTQKYSNWEEVYKKLKSDGLPE-EKDEIEKIRSCVEEVSETRPE 319
Query: 155 -NCYHLRRHIWNDVNEDWPFYTEEEK 179
+ LR ++V++ W F+ +EEK
Sbjct: 320 MSVMSLRTSFLSEVDQRWMFFNQEEK 345
Score = 35.9 bits (79), Expect = 0.062
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 282 ERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPM---SPH 338
E+++ I + AY +F + Y Y E + + +V++ F LE +L A + SP
Sbjct: 549 EKQFGDIKTLSEAEAYFKQFHKEYPLYMECHEMLTKVSSEFRGLEVKLLTAVALSKTSPS 608
Query: 339 HQS------IEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQL 386
Q+ IE+ I Y D + R+R L KL LK + ++++
Sbjct: 609 PQNMQNVKQIEKNIQNRYAHFEKDPEFMKARQRHTDLRSKLNVLKTRIGSWEKM 662
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 34.3 bits (75), Expect = 0.19
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENEL--KRAQPMSPHHQSIEQRI---VE 348
RRA A + E ++LY AQ+ A LE + + ++ H +E RI +E
Sbjct: 1716 RRAIDKSLASMERENQQLYRNCAQLQAQIQNLERDAGNRSVTKLAKEHSLLEARIAALIE 1775
Query: 349 EYRRVSN-----DAAYQHERR 364
E R++ + DA Y H+R+
Sbjct: 1776 EKRQLQSMLDQKDANYSHKRK 1796
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 34.3 bits (75), Expect = 0.19
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENEL--KRAQPMSPHHQSIEQRI---VE 348
RRA A + E ++LY AQ+ A LE + + ++ H +E RI +E
Sbjct: 1716 RRAIDKSLASMERENQQLYRNCAQLQAQIQNLERDAGNRSVTKLAKEHSLLEARIAALIE 1775
Query: 349 EYRRVSN-----DAAYQHERR 364
E R++ + DA Y H+R+
Sbjct: 1776 EKRQLQSMLDQKDANYSHKRK 1796
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 34.3 bits (75), Expect = 0.19
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENEL--KRAQPMSPHHQSIEQRI---VE 348
RRA A + E ++LY AQ+ A LE + + ++ H +E RI +E
Sbjct: 1476 RRAIDKSLASMERENQQLYRNCAQLQAQIQNLERDAGNRSVTKLAKEHSLLEARIAALIE 1535
Query: 349 EYRRVSN-----DAAYQHERR 364
E R++ + DA Y H+R+
Sbjct: 1536 EKRQLQSMLDQKDANYSHKRK 1556
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 34.3 bits (75), Expect = 0.19
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENEL--KRAQPMSPHHQSIEQRI---VE 348
RRA A + E ++LY AQ+ A LE + + ++ H +E RI +E
Sbjct: 1716 RRAIDKSLASMERENQQLYRNCAQLQAQIQNLERDAGNRSVTKLAKEHSLLEARIAALIE 1775
Query: 349 EYRRVSN-----DAAYQHERR 364
E R++ + DA Y H+R+
Sbjct: 1776 EKRQLQSMLDQKDANYSHKRK 1796
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 33.5 bits (73), Expect = 0.33
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRV 353
R+ ++ + E + R+ A+ A ++ + AQP HH+ +R+ E RR
Sbjct: 663 RQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRRE 722
Query: 354 SNDAAYQHERRRVNYLDKKLTHLKRM 379
Q E R L + L H ++
Sbjct: 723 EEHHRRQEEESRARALQQSLLHASQV 748
>Z83112-4|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 33.5 bits (73), Expect = 0.33
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRV 353
R+ ++ + E + R+ A+ A ++ + AQP HH+ +R+ E RR
Sbjct: 663 RQQHERQQQERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRRE 722
Query: 354 SNDAAYQHERRRVNYLDKKLTHLKRM 379
Q E R L + L H ++
Sbjct: 723 EEHHRRQEEESRARALQQSLLHASQV 748
>Z70682-4|CAE46662.1| 187|Caenorhabditis elegans Hypothetical
protein F08G5.3b protein.
Length = 187
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 360 QHERRRVNYLDKKLTHLKRMVHQYDQLIYEI 390
Q + R+ YLDK+ HL++M H + + E+
Sbjct: 38 QQFQERLTYLDKRYDHLRKMTHSLRKKVNEL 68
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 297 YKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSN 355
YKN+ EL + + ++ + E K P SPH + +RI +E ++N
Sbjct: 366 YKNKMQELQLQTAKFIGDFGKLCVPYV-FRKEAKNINPFSPHLRDRTKRIAKELASIAN 423
>Z70682-3|CAA94582.2| 151|Caenorhabditis elegans Hypothetical
protein F08G5.3a protein.
Length = 151
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 363 RRRVNYLDKKLTHLKRMVHQYDQLIYEI 390
+ R+ YLDK+ HL++M H + + E+
Sbjct: 5 QERLTYLDKRYDHLRKMTHSLRKKVNEL 32
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 28.7 bits (61), Expect = 9.4
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRV 353
RR + E EL + +L A V+ + +LE EL A + + VE+ ++
Sbjct: 1712 RRNAEAECIELREQNNDLNAHVSALTGQRRKLEGELLAAHAELEEIANELKNAVEQGQKA 1771
Query: 354 SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLIYEIGIKL 394
S DAA E R + H++R+ + I E+ I+L
Sbjct: 1772 SADAARLAEELRQE--QEHSMHIERIRKGLELQIKEMQIRL 1810
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 28.7 bits (61), Expect = 9.4
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 294 RRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRV 353
RR + E EL + +L A V+ + +LE EL A + + VE+ ++
Sbjct: 1712 RRNAEAECIELREQNNDLNAHVSALTGQRRKLEGELLAAHAELEEIANELKNAVEQGQKA 1771
Query: 354 SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLIYEIGIKL 394
S DAA E R + H++R+ + I E+ I+L
Sbjct: 1772 SADAARLAEELRQE--QEHSMHIERIRKGLELQIKEMQIRL 1810
>U80953-5|AAO61446.3| 317|Caenorhabditis elegans Dachsund
transcription factor homologprotein 1, isoform b
protein.
Length = 317
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 130 SSEGIKDKERSAVNKILPQISLMKDNCYHLRRHIWNDVNE 169
SS K+ E S +NK++ I L H R +W + +E
Sbjct: 210 SSSSGKNDEASMMNKVMSLIELASQQFKHEREELWKERSE 249
>U80953-4|AAB52555.2| 420|Caenorhabditis elegans Dachsund
transcription factor homologprotein 1, isoform a
protein.
Length = 420
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 130 SSEGIKDKERSAVNKILPQISLMKDNCYHLRRHIWNDVNE 169
SS K+ E S +NK++ I L H R +W + +E
Sbjct: 313 SSSSGKNDEASMMNKVMSLIELASQQFKHEREELWKERSE 352
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 347 VEEYRRVSNDAAYQHERRRVNYLDKKLTHLK 377
+E + V D A ERRR+N L+ L HL+
Sbjct: 56 IERAKTVRRDKANARERRRMNSLNDALEHLR 86
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,594,568
Number of Sequences: 27539
Number of extensions: 379090
Number of successful extensions: 996
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 22
length of query: 472
length of database: 12,573,161
effective HSP length: 84
effective length of query: 388
effective length of database: 10,259,885
effective search space: 3980835380
effective search space used: 3980835380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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