GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   5.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   5.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 323 TRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQ 382
           T  ++++  A P   H+ +I   + E+   + ND   +H   RV  L+ +  +L +++ Q
Sbjct: 306 TDKKSKVNFALPELQHNLNILVDMCEQ-DIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQ 364

Query: 383 YDQLI 387
           + QLI
Sbjct: 365 HSQLI 369


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 272 DEITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYREL 311
           +++ + LDEI  RY   +SS      +    EL  E+R+L
Sbjct: 323 NQLISSLDEIRTRYKDSSSSVEGWENRATIPELNEEFRDL 362


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 381 HQYDQLIYEIGIKLYMYV 398
           H+YDQ ++ +  KL MY+
Sbjct: 491 HEYDQNVWVLSNKLAMYL 508


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 134 IKDKERSAVNKILPQISLMKDNCYHLRRHIWNDVNEDWPFYTEEEKR 180
           + D   S  +   P+ +   DNC HL      D++ + P + ++E R
Sbjct: 162 LADNSVSIKDPWFPRHASDLDNCNHLMTKFEPDLDMNHPGFADKEYR 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,216
Number of Sequences: 429
Number of extensions: 4800
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 5
length of query: 472
length of database: 140,377
effective HSP length: 60
effective length of query: 412
effective length of database: 114,637
effective search space: 47230444
effective search space used: 47230444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)