GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    33   0.54 
At3g61570.1 68416.m06896 intracellular protein transport protein...    31   2.2  
At3g07100.1 68416.m00845 protein transport protein Sec24, putati...    30   3.8  
At3g44690.1 68416.m04806 expressed protein                             29   8.8  
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea...    29   8.8  

>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 32.7 bits (71), Expect = 0.54
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)

Query: 135 KDKERSAVNKILPQISLMKDNCYH---LRRHIWNDVNEDWPFYTEEEKRMLK-SGFY--G 188
           KD+ERS + K   Q+  +K +C     L   +W+ +     +YTE   ++L+  G Y   
Sbjct: 337 KDEERSKILKQFAQV--LKSSCNENDTLSCTLWDSLI----YYTERNLQLLEVPGSYLDK 390

Query: 189 CSIITTELCIRLIDLKLGIHVENTFKK 215
           CS      CI  +DLK   H+ N F++
Sbjct: 391 CSFFKNPQCICFLDLKHLEHILNYFRQ 417


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 324 RLENELKRAQPMSPHHQSIEQRIV-EEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQ 382
           R  NE +R+Q +S   +S++Q I  +E  R+SND   +  +  V+ L++KLT+  R +  
Sbjct: 398 RQTNEYQRSQ-ISHLEKSLKQAISNQEDNRLSNDNQIRKLKDTVDDLNQKLTNCLRTIES 456

Query: 383 YDQLIYEIGIKLYMYVLYFKSVTHLK 408
            +  +  +   L  Y    ++  H +
Sbjct: 457 KNVELLNLQTALGQYYAEIEAKEHFE 482


>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
           similar to protein transport protein Sec24A
           (SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
          Length = 1038

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 290 SSGMRRA-YKNEFAELYTEYRELY--ARVAQVAALFTRLENELKRAQPMSPHHQSIEQRI 346
           S G RR       A + T+  E+Y  A    + +L+ RL  E   +  +     +I+Q+I
Sbjct: 753 SCGERRIRVHTSVAPVVTDLGEMYRQADTGSIVSLYARLAIEKSLSAKLDDARNAIQQKI 812

Query: 347 VEEYRRVSNDAAYQH 361
           V+  +   N  A QH
Sbjct: 813 VKALKEYRNLHAVQH 827


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 13/75 (17%)

Query: 313 ARVAQVAALFTRLENELKRAQPMSPHHQSIEQ---------RIVEEYRRVSNDAAYQHER 363
           + +A V A  T LE    R + M+ H++S+++         R+V+E  R  +   +++E 
Sbjct: 329 SNIADVDAADTHLE--FSRKERMADHYESVKEDYPFVELGSRVVDE--RDDHYRNFRNEE 384

Query: 364 RRVNYLDKKLTHLKR 378
           R+V YLD K   L++
Sbjct: 385 RKVVYLDNKCQVLRK 399


>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
           similarity to SP|Q9UTK5 Abnormal long morphology protein
           1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
           profile PF00787: PX domain
          Length = 643

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 272 DEITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKR 331
           D     L+++ RRY  + +       K +   L  E + L     ++    TR   E   
Sbjct: 499 DATKQQLEDLSRRYVELEAKS-----KADIKVLVREVKSLRRSHMEMEKELTRSLTEKSD 553

Query: 332 AQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVN 367
            + +    + I +  +E  RR+ +D    H+R +VN
Sbjct: 554 TEKLLQQERIIVENTLEARRRLYSDCEILHDRLKVN 589


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,092,194
Number of Sequences: 28952
Number of extensions: 353102
Number of successful extensions: 900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 6
length of query: 472
length of database: 12,070,560
effective HSP length: 84
effective length of query: 388
effective length of database: 9,638,592
effective search space: 3739773696
effective search space used: 3739773696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)