GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001446-TA|BGIBMGA001446-PA|undefined
         (88 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   2.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    20   3.4  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 19  ELGNLLEEFSTLALSSEQPEKTTNN 43
           E+G + E    + LS  +PEK T +
Sbjct: 161 EVGGVEEAKGPVDLSKSEPEKKTES 185


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 26  EFSTLALSSEQPEKTTNNFEKPGILDFLRS 55
           E   L ++++  EK+  NF   G  D  RS
Sbjct: 322 EQQELYMAAQVIEKSVANFTAAGFFDVKRS 351


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,210
Number of Sequences: 317
Number of extensions: 553
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 114,650
effective HSP length: 47
effective length of query: 41
effective length of database: 99,751
effective search space:  4089791
effective search space used:  4089791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)