Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001446-TA|BGIBMGA001446-PA|undefined
(88 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 29 0.099
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 28 0.17
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 27 0.53
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 1.2
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 24 2.8
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ... 24 3.7
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 23 4.9
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 23 4.9
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 23 6.5
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 23 6.5
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 8.6
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 23 8.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 23 8.6
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.1 bits (62), Expect = 0.099
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 24 LEEFSTLALSSEQPEKTTNNFEKP 47
+ E S LA SS++PEKT N KP
Sbjct: 1 MTEISELASSSQKPEKTKYNLPKP 24
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 28.3 bits (60), Expect = 0.17
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 10 VSAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRS--QKRDIPNA 63
VSA EM RRE+ L E + L ++ N FEK F + + R++P+A
Sbjct: 219 VSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFTKMFTKDIVRLREVPDA 274
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 0.53
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 6 QSTCVSAKEMVRRELGNLLEEFSTLALSSEQPEK---TTNNFEKPGILDFLRSQKRDIPN 62
Q T S ++RR L + EE+ L ++++ EK +++N P SQKRDIP+
Sbjct: 69 QPTEFSCGNIIRRILRLIREEYQELLKTADENEKLIVSSSNSSSP-------SQKRDIPS 121
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 1.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 20 LGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQ 56
L N+ ++ S++ LS ++ + + +PGI + RSQ
Sbjct: 102 LQNICKDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQ 138
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 24.2 bits (50), Expect = 2.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 36 QPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVR 72
+PE+ + I+ F+ S+K D+ N VN +R
Sbjct: 855 KPERLLESAAGQFIISFITSEKSDLLNTHTDFVNAIR 891
>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
Apc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 23.8 bits (49), Expect = 3.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 43 NFEKPGILDFLRSQKRDIPNATAAAVNIVRILRLKPPDIETEA 85
+F + G+LD Q + + N + + VR++++ P+IE A
Sbjct: 127 DFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQPA 169
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 23.4 bits (48), Expect = 4.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 5 NQSTCVSAKEMVRRELGNLLEEFSTLALSSEQPEK 39
N AKE +++L +L EEF ++A+ + K
Sbjct: 211 NDPDAQKAKEETKQKLQDLYEEFKSVAVDLQGDPK 245
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 23.4 bits (48), Expect = 4.9
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 14 EMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNI 70
E ++ + N+L+E + ++ ++ +N + ++D S D +A+ VNI
Sbjct: 6 EQLQMQTSNILKELHSTSIFTDSTTSQLHNGGENSVMDTEESSAIDKLSASLQQVNI 62
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 23.0 bits (47), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 24 LEEFSTLALSSEQPEKTTNNFEKPG 48
+++F A SSE P T NF G
Sbjct: 361 MQKFPANAASSESPPNATGNFLPSG 385
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 23.0 bits (47), Expect = 6.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 20 LGNLLEEFSTLALSSEQPEKTTNNFEK 46
+ N+L++ + + E+ EK NF K
Sbjct: 893 MSNVLDQLPAMTIGQEEREKFLANFSK 919
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 22.6 bits (46), Expect = 8.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 16 VRRELGNLLEEFSTLALSSEQPEKTT 41
V R++ +LL+E + + S+QP T
Sbjct: 52 VERKIQSLLDELAEVLFQSKQPNDLT 77
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 22.6 bits (46), Expect = 8.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 19 ELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQ 56
E G L+E + L ++PE T + + LRS+
Sbjct: 48 EFGEKLQEITKECLKGKKPENTEDGATSNKAFEGLRSE 85
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 22.6 bits (46), Expect = 8.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 46 KPGILDFLRSQK 57
KPG++DFLR +K
Sbjct: 751 KPGMVDFLRLEK 762
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.127 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,213
Number of Sequences: 5004
Number of extensions: 12404
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 2,362,478
effective HSP length: 61
effective length of query: 27
effective length of database: 2,057,234
effective search space: 55545318
effective search space used: 55545318
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)
- SilkBase 1999-2023 -