Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001446-TA|BGIBMGA001446-PA|undefined
(88 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0141 - 4889020-4889191,4889401-4889675 28 0.80
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 28 1.1
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 1.1
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 27 1.9
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 27 2.5
02_05_1179 + 34761054-34761198,34761293-34761447,34761541-347617... 26 4.3
07_01_0029 + 235052-235252,235328-236104 25 5.7
02_05_1251 - 35249550-35249814,35249962-35250347,35250489-352505... 25 5.7
02_05_1161 - 34583072-34583249,34583363-34583715,34583820-345840... 25 5.7
11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844 25 7.5
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 25 7.5
10_08_0311 + 16671641-16671772,16671868-16671957,16672073-166721... 25 9.9
>09_02_0141 - 4889020-4889191,4889401-4889675
Length = 148
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 32 LSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILR 75
+++ Q + T N + +L K+D PNA AA V++ + R
Sbjct: 25 VTTGQMLQPTTNLSSHHFIHYLNGTKKDYPNAVAAYVDVRDVAR 68
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 17 RRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKR 58
R E+ +LE+ + SE ++T + +P LD L SQKR
Sbjct: 1573 REEIYLMLEDLVSNISYSETDDETHGYYLEPASLDLLTSQKR 1614
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 24 LEEFSTLALSSE--QPEKTTNNFEKPGILDFLRSQKRDIPNATAAAV--NIVRILRLKPP 79
+E F T + E P+ + K +L FL+ K IP ATA A+ +++R L +
Sbjct: 461 MESFFTSVIVPELQAPDWESEPMLKATVLRFLKEFKDQIPKATALALLPSVIRFLIHESN 520
Query: 80 DIETEAAT 87
+ + AAT
Sbjct: 521 VVHSYAAT 528
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 27.1 bits (57), Expect = 1.9
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 7 STCVSAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQ-KRDIPNATA 65
ST ++ + + L +LE+F + Q EK F+K ++ LRS+ +I A
Sbjct: 100 STMNKEEKWLDKALDRILEKFEQMEAKRMQEEKINQIFQKLEDIEVLRSKASEEIIEAIR 159
Query: 66 AAVNIVRILR-LKPPDIETEAATK 88
A +++ + P T A TK
Sbjct: 160 ATTAVLKAKSPIAPIAPPTPAPTK 183
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 26.6 bits (56), Expect = 2.5
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 13 KEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQK--RDIPNATAAAVNI 70
+ M R E+ L++ L+ + T++ E G+ DF S + R+I N AA
Sbjct: 2335 QRMHREEIELELQKVRQQMLAVPSSGQATSSLEG-GMGDFTDSSRHSREIKNELLAAQEN 2393
Query: 71 VRILRLKPPDIETEAA 86
+RIL+ + ETE A
Sbjct: 2394 IRILQKDVAEKETEIA 2409
>02_05_1179 +
34761054-34761198,34761293-34761447,34761541-34761723,
34761825-34762177,34762288-34762451,34762837-34762930,
34763898-34763958
Length = 384
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 41 TNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILR 75
T NF + +L K+ PNA AA V++ + R
Sbjct: 202 TLNFSSNHVARYLMGTKKSYPNAVAAYVDVRDVAR 236
>07_01_0029 + 235052-235252,235328-236104
Length = 325
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 8 TCVSAKEMVRRELGNLLEEFSTLA 31
TC + +E+VRRE+ +L TLA
Sbjct: 30 TCPNVEEIVRREMEEILRVAPTLA 53
>02_05_1251 -
35249550-35249814,35249962-35250347,35250489-35250578,
35250672-35250955,35252213-35252429
Length = 413
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 22 NLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVN 69
N L + ST A +S E++++ F G+L+ + T AA+N
Sbjct: 245 NSLPDDSTHAAASNSSEESSDPFGLDGLLEHKSKKSEKAREKTVAALN 292
>02_05_1161 -
34583072-34583249,34583363-34583715,34583820-34584002,
34584096-34584250,34584346-34584493
Length = 338
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 41 TNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILR 75
T NF + +L K+ PNA AA V++ + R
Sbjct: 203 TLNFSTNHVARYLMGTKKSYPNAVAAYVDVRDVAR 237
>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
Length = 774
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 18 RELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQ 56
+++GN+L + + A+ ++ EK TN E P ++ +R Q
Sbjct: 10 KKVGNVLADEAANAVIAKVSEKVTNLKEMPEKVEEIRKQ 48
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 20 LGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAV 68
L +LE+F + Q +K NF+K L+ + +++ T AA+
Sbjct: 56 LDRILEKFEQMEAKRRQEDKLNQNFQK---LEEIEARRSKASEETIAAI 101
>10_08_0311 +
16671641-16671772,16671868-16671957,16672073-16672150,
16672299-16672373,16672423-16672466,16672606-16672658,
16673342-16673463,16673687-16673803,16673912-16674038,
16674150-16674253,16674379-16674514,16674912-16674928
Length = 364
Score = 24.6 bits (51), Expect = 9.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 14 EMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNI 70
E R ELG LL S + + + PEK T+ P I L P A A V +
Sbjct: 213 ERTREELGGLLSLASYIVCNGKFPEKWTS---VPSIPSALLEILLQYPRACFAVVTL 266
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.127 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,815
Number of Sequences: 37544
Number of extensions: 70327
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 14,793,348
effective HSP length: 67
effective length of query: 21
effective length of database: 12,277,900
effective search space: 257835900
effective search space used: 257835900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)
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