GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001446-TA|BGIBMGA001446-PA|undefined
         (88 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)                   27   2.1  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 26   4.9  
SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_35668| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    25   6.5  
SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1)                   25   6.5  
SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)                 25   6.5  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   25   8.6  
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1)                   25   8.6  

>SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)
          Length = 227

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 2  AFANQSTCVSAKEMVRRELGNLLEEFSTLA----LSSEQPEKTTNNFEKP 47
          AF  +S+    KE+++REL  L +E S L+     S++QP  T    EKP
Sbjct: 16 AFIAESSRARVKEVLQRELIKLEQEVSLLSREKPASTDQPNATAE--EKP 63


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 10  VSAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRD 59
           V A +MV R L     +F T+A  S   ++  + + K G  + LRS K+D
Sbjct: 65  VKALDMVLRRLKEKGFDFKTVACLSGTGQQHGSVYWKNGAQNVLRSLKKD 114


>SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 55  SQKRDIPNATAAAVNIVRILRLKPPDIETE 84
           +QK D P  T   +N++R  RL PP + T+
Sbjct: 117 AQKLDFPVVTICNMNVLRASRL-PPKLRTK 145


>SB_35668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 55  SQKRDIPNATAAAVNIVRILRLKPPDIETE 84
           +QK D P  T   +N++R  RL PP + T+
Sbjct: 78  AQKLDFPVVTICNMNVLRASRL-PPKLRTK 106


>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 16  VRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRD 59
           VR+     LEEFS   L+S      + N ++  I+D    +K+D
Sbjct: 386 VRKNPPARLEEFSEFELNSTASNSESENVKETAIIDDDIEEKKD 429


>SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1)
          Length = 175

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 27  FSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDI 60
           FS     +EQP+K T   +KPG L  ++  K D+
Sbjct: 134 FSYFPKLAEQPQKKTKKPKKPG-LTAIKKPKTDV 166


>SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)
          Length = 486

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 47  PGILDFLRSQKRDIPN----ATAAAVNIVRILRLKPPDIETE 84
           P IL  L +  + +P+    AT A   +  ILR+ PPDI  E
Sbjct: 370 PAILRLLSTPGQFLPDKPLVATQAMKLVDEILRIPPPDINDE 411


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 31   ALSSEQPEKTTNNFEKPGILDFLRSQKR 58
            A  +E  E T  N++KPGI+ + R   R
Sbjct: 1493 ARDTENDETTGANYDKPGIMLYHRKSAR 1520


>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/66 (15%), Positives = 33/66 (50%)

Query: 5   NQSTCVSAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNAT 64
           +Q +C+S   +++R++ + ++  + L    + PE      E    +  L+++ +++  + 
Sbjct: 45  SQKSCISMVNLIKRKIKDFVQSLARLERQDQTPESRKKVAELQFRITELKNKLKELEMSL 104

Query: 65  AAAVNI 70
            ++  I
Sbjct: 105 PSSAGI 110


>SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1)
          Length = 166

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 27  FSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDI 60
           FS     +EQP+K T   +KPG L  ++  K D+
Sbjct: 134 FSYFPKLAEQPQKKTKKPKKPG-LTAIKKPKTDL 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,194
Number of Sequences: 59808
Number of extensions: 82280
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 10
length of query: 88
length of database: 16,821,457
effective HSP length: 65
effective length of query: 23
effective length of database: 12,933,937
effective search space: 297480551
effective search space used: 297480551
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)