GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001446-TA|BGIBMGA001446-PA|undefined
         (88 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003195-1|AAO24950.1| 1199|Drosophila melanogaster RE53824p pro...    28   1.8  
AY051885-1|AAK93309.1|  731|Drosophila melanogaster LD37351p pro...    28   1.8  
AE013599-1369|AAF58601.2| 1199|Drosophila melanogaster CG8290-PA...    28   1.8  
M21159-1|AAA28927.1|  557|Drosophila melanogaster protein ( D.me...    26   5.6  
AY118416-1|AAM48445.1|  557|Drosophila melanogaster RE70560p pro...    26   5.6  
AE014297-3168|AAN13906.1|  557|Drosophila melanogaster CG5374-PB...    26   5.6  
AE014297-3167|AAF56009.1|  557|Drosophila melanogaster CG5374-PA...    26   5.6  
AY121649-1|AAM51976.1|  950|Drosophila melanogaster LD23647p pro...    26   7.4  
AE014134-2238|AAF53220.2|  950|Drosophila melanogaster CG5787-PA...    26   7.4  

>BT003195-1|AAO24950.1| 1199|Drosophila melanogaster RE53824p
           protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 35  EQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILRLKPPDIETEAATK 88
           +QP K T N   P +L   R +  D+  +  A + +  +++LK  + E E A K
Sbjct: 732 KQPRKKTTNKPNPALLQLERQRMEDMKKSD-AKLKMKVMVKLKRAEDEFEVARK 784


>AY051885-1|AAK93309.1|  731|Drosophila melanogaster LD37351p
           protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 35  EQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILRLKPPDIETEAATK 88
           +QP K T N   P +L   R +  D+  +  A + +  +++LK  + E E A K
Sbjct: 264 KQPRKKTTNKPNPALLQLERQRMEDMKKSD-AKLKMKVMVKLKRAEDEFEVARK 316


>AE013599-1369|AAF58601.2| 1199|Drosophila melanogaster CG8290-PA,
           isoform A protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 35  EQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILRLKPPDIETEAATK 88
           +QP K T N   P +L   R +  D+  +  A + +  +++LK  + E E A K
Sbjct: 732 KQPRKKTTNKPNPALLQLERQRMEDMKKSD-AKLKMKVMVKLKRAEDEFEVARK 784


>M21159-1|AAA28927.1|  557|Drosophila melanogaster protein (
           D.melanogaster T complexprotein 1 (Tcp-1) mRNA, complete
           cds. ).
          Length = 557

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 38  EKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRI---LRLKPPD 80
           E    + +K G+L+   S+ + +  AT AA+ I+RI   ++L P D
Sbjct: 495 EGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPED 540


>AY118416-1|AAM48445.1|  557|Drosophila melanogaster RE70560p
           protein.
          Length = 557

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 38  EKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRI---LRLKPPD 80
           E    + +K G+L+   S+ + +  AT AA+ I+RI   ++L P D
Sbjct: 495 EGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPED 540


>AE014297-3168|AAN13906.1|  557|Drosophila melanogaster CG5374-PB,
           isoform B protein.
          Length = 557

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 38  EKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRI---LRLKPPD 80
           E    + +K G+L+   S+ + +  AT AA+ I+RI   ++L P D
Sbjct: 495 EGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPED 540


>AE014297-3167|AAF56009.1|  557|Drosophila melanogaster CG5374-PA,
           isoform A protein.
          Length = 557

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 38  EKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRI---LRLKPPD 80
           E    + +K G+L+   S+ + +  AT AA+ I+RI   ++L P D
Sbjct: 495 EGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPED 540


>AY121649-1|AAM51976.1|  950|Drosophila melanogaster LD23647p
           protein.
          Length = 950

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 61  PNATAAAVNIVRILRLKPPDIETEAATK 88
           PNA    V I +     PP +ETEAA+K
Sbjct: 639 PNAPGFPVQISQKRVAPPPPLETEAASK 666


>AE014134-2238|AAF53220.2|  950|Drosophila melanogaster CG5787-PA
           protein.
          Length = 950

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 61  PNATAAAVNIVRILRLKPPDIETEAATK 88
           PNA    V I +     PP +ETEAA+K
Sbjct: 639 PNAPGFPVQISQKRVAPPPPLETEAASK 666


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.313    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,954,981
Number of Sequences: 52641
Number of extensions: 136596
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 9
length of query: 88
length of database: 24,830,863
effective HSP length: 67
effective length of query: 21
effective length of database: 21,303,916
effective search space: 447382236
effective search space used: 447382236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)