GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001446-TA|BGIBMGA001446-PA|undefined
         (88 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50510.1 68414.m05665 indigoidine synthase A family protein s...    29   0.29 
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    27   1.2  
At4g35200.1 68417.m05003 hypothetical protein contains Pfam prof...    27   1.2  
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    27   1.2  
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    25   4.7  
At3g62770.2 68416.m07051 transport protein-related weak similari...    25   4.7  
At3g62770.1 68416.m07052 transport protein-related weak similari...    25   4.7  
At4g02010.1 68417.m00271 protein kinase family protein contains ...    25   6.2  
At1g16130.1 68414.m01933 wall-associated kinase, putative simila...    25   6.2  
At1g04030.1 68414.m00390 expressed protein                             25   6.2  
At4g21540.1 68417.m03112 diacylglycerol kinase family protein co...    25   8.2  

>At1g50510.1 68414.m05665 indigoidine synthase A family protein
           similar to IndA protein (GI:7576263) [Erwinia
           chrysanthemi]; contains Pfam profile PF04227:
           Indigoidine synthase A like protein
          Length = 330

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 21  GNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRI 73
           GNL+E  +  AL+  + +  T N E P    FL ++  ++   T+ A NI  +
Sbjct: 264 GNLIESATQRALTEAREQNVTGNAETP----FLLARVNELTGGTSLAANIALV 312


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 19  ELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILRLKP 78
           E+  + ++F +  +  ++P+  T     P   DF+   +R++ +A + A NI++  +L P
Sbjct: 351 EVKKIGDDFFSFIVDCKEPKACTVLLRGPS-KDFINEVERNLQDAMSVARNIIKNPKLVP 409

Query: 79  PDIETE 84
               TE
Sbjct: 410 GGGATE 415


>At4g35200.1 68417.m05003 hypothetical protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 253

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 28  STLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAAVNIVRILRLKPPDIETE 84
           + LALS +Q EK  +   +  ILD     K  I       + I  ILR KP D+  E
Sbjct: 64  TNLALSQDQIEKLLDGSLR--ILDLCNIAKDAISQMKEGLMEIQSILRRKPGDLSGE 118


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 11  SAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILDFLRSQKRDIPNATAAA 67
           S+K   +++  N++EE   +  S +Q ++   N EK G     RS+K+D  N    A
Sbjct: 671 SSKRSKKKDSLNIVEEAQVVD-SLQQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEA 726


>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 58  RDIPNATAAAVNIVRILRLKPPDIETE 84
           R  P A   A+N+VR + L+ P++ TE
Sbjct: 341 RSSPEAIPVALNVVREMFLRIPELMTE 367


>At3g62770.2 68416.m07051 transport protein-related weak
          similarity to Gsa12p [Pichia pastoris] GI:18307769;
          contains 1 WD-40 repeat (PF00400); putative proteins -
          different species
          Length = 432

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/19 (42%), Positives = 17/19 (89%)

Query: 24 LEEFSTLALSSEQPEKTTN 42
          L+ FS+++L+S++P +T+N
Sbjct: 41 LDSFSSMSLNSDEPNQTSN 59


>At3g62770.1 68416.m07052 transport protein-related weak
          similarity to Gsa12p [Pichia pastoris] GI:18307769;
          contains 1 WD-40 repeat (PF00400); putative proteins -
          different species
          Length = 307

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/19 (42%), Positives = 17/19 (89%)

Query: 24 LEEFSTLALSSEQPEKTTN 42
          L+ FS+++L+S++P +T+N
Sbjct: 41 LDSFSSMSLNSDEPNQTSN 59


>At4g02010.1 68417.m00271 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 725

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 21  GNLLEEFSTLALSSEQPEKTTNNFEKPGIL 50
           G+L    ST  LS E+ ++ T+NFE   IL
Sbjct: 357 GSLPHPASTRFLSYEELKEATSNFESASIL 386


>At1g16130.1 68414.m01933 wall-associated kinase, putative similar
           to putative serine/threonine-specific protein kinase
           GI:7270012 from [Arabidopsis thaliana]
          Length = 748

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 13  KEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGIL 50
           K+ + R+ GN+  E S +  SS + EK T+NF K  +L
Sbjct: 388 KQQLARKEGNV--EMSRI-FSSHELEKATDNFNKNRVL 422


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 1   MAFANQSTCVSAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGILD 51
           + F+  S     KE+  +++G+  EE  +    S +  +  N+++  G+L+
Sbjct: 156 VGFSEDSLHNPTKEVYTQDIGDKTEEIDSKLRRSNETVRDGNHYDGQGVLN 206


>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 1240

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 9   CVSAKEMVRRELGNLLEEFSTLALSSEQPEKTTNNFEKPGIL 50
           C+S +E+V  +L    +  S       QPE+  +    P I+
Sbjct: 766 CISQRELVLAKLSPTTKLVSLHLAMDRQPERENDELPSPAII 807


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,993
Number of Sequences: 28952
Number of extensions: 60166
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 12,070,560
effective HSP length: 67
effective length of query: 21
effective length of database: 10,130,776
effective search space: 212746296
effective search space used: 212746296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)