GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001444-TA|BGIBMGA001444-PA|IPR000618|Insect cuticle
protein, IPR011047|Quinonprotein alcohol dehydrogenase-like,
IPR006970|PT repeat
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887     30   2.2  
02_05_1039 + 33707196-33708815                                         29   5.0  
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055     28   8.7  

>04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887
          Length = 253

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 191 VYTVHYWADKTGYHAYGDHLPTPPPVPAAIQ 221
           V+  +Y A+ T Y+A G + P PPP+PA ++
Sbjct: 196 VHLPYYAANATPYYA-GGYYPIPPPMPAMLR 225


>02_05_1039 + 33707196-33708815
          Length = 539

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 150 YEYQIADGTHVGEEGYFTNPNT---EEASLVKKGWYSYTGADGKVYTVHYWADKTGY--- 203
           Y +Q A      + G+ ++ N     E    K+ + +   +D  V     W D+ G+   
Sbjct: 351 YFHQNACKVFEQDMGFLSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMP 410

Query: 204 HAYGDHLPTPPPVPAAIQAA 223
           + +G    +PPPVPA ++ A
Sbjct: 411 YYFGHSTLSPPPVPAVVEQA 430


>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
          Length = 963

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 158 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 217
           T VG+    TNP   +  LV K   S   A  K       A + G    G   PTPPP P
Sbjct: 489 TQVGDTVEATNPLRADKDLVAKKAKSPVNAAEKTEAGKSAAGE-GVRTTGSSNPTPPPSP 547

Query: 218 AAI 220
             I
Sbjct: 548 PFI 550


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,099,233
Number of Sequences: 37544
Number of extensions: 248486
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 3
length of query: 320
length of database: 14,793,348
effective HSP length: 82
effective length of query: 238
effective length of database: 11,714,740
effective search space: 2788108120
effective search space used: 2788108120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)