GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001444-TA|BGIBMGA001444-PA|IPR000618|Insect cuticle
protein, IPR011047|Quinonprotein alcohol dehydrogenase-like,
IPR006970|PT repeat
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 134  PVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVY- 192
            P  + E+YY D      E   A G   G++G    P  E      + +Y+Y GAD + Y 
Sbjct: 1078 PYQEGEVYYYDEQGNIVEGYDA-GQVYGQDGQLLAPAVEATEAYGEEYYTYEGADQQAYP 1136

Query: 193  TVHYWADKTGYHAYGD 208
            +   + +  G   Y D
Sbjct: 1137 SEQVYVEGQGEAQYAD 1152


>SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 147 SYKYEYQIADGTHVGEEGYFTNPNTE 172
           S ++E +I DG   G++G F + NTE
Sbjct: 43  STQWEVKIQDGARTGQKGIFRDDNTE 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,033,508
Number of Sequences: 59808
Number of extensions: 268619
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 2
length of query: 320
length of database: 16,821,457
effective HSP length: 82
effective length of query: 238
effective length of database: 11,917,201
effective search space: 2836293838
effective search space used: 2836293838
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)