GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001444-TA|BGIBMGA001444-PA|IPR000618|Insect cuticle
protein, IPR011047|Quinonprotein alcohol dehydrogenase-like,
IPR006970|PT repeat
         (320 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21670.1 68414.m02712 expressed protein similar to TolB prote...    29   5.5  
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    28   7.2  
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil...    28   9.6  

>At1g21670.1 68414.m02712 expressed protein similar to TolB protein
           precursor (SP:P50601) {Pseudomonas aeruginosa}
          Length = 703

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 151 EYQIADGTHVGEEGYFTNPNTEEASLVKK 179
           E+++ DG  +   GYF +P+T   SL+ K
Sbjct: 63  EHRLTDGKSINFNGYFASPSTALISLLPK 91


>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 163 EGYFTNPNTEEASLVKKGWYSYTGADGKVYTVH 195
           +GY+ NP+T +  L + GW++ TG  G +   H
Sbjct: 555 KGYYKNPSTTKQVLNESGWFN-TGDTGWIAPHH 586


>At5g15140.1 68418.m01774 aldose 1-epimerase family protein
          similar to SP|P05149 Aldose 1-epimerase precursor (EC
          5.1.3.3) (Mutarotase) from Acinetobacter calcoaceticus;
          contains Pfam profile PF01263 Aldose 1-epimerase
          Length = 490

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 3  LILIVAAFLAVTFADNVE-SDKEIEDSEAAESV 34
          L++ +   ++VTFADNVE   K++E S+  + V
Sbjct: 12 LLVTLGVVISVTFADNVELKSKDLESSKKDKKV 44


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.131    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,596,692
Number of Sequences: 28952
Number of extensions: 192372
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 3
length of query: 320
length of database: 12,070,560
effective HSP length: 81
effective length of query: 239
effective length of database: 9,725,448
effective search space: 2324382072
effective search space used: 2324382072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)