GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001443-TA|BGIBMGA001443-PA|undefined
         (56 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q988T4 Cluster: Two-component, nitrogen fixation regula...    32   2.0  
UniRef50_Q9UBZ9 Cluster: DNA repair protein REV1; n=32; Euteleos...    30   8.0  

>UniRef50_Q988T4 Cluster: Two-component, nitrogen fixation
           regulatory protein; FixJ; n=5; Rhizobiales|Rep:
           Two-component, nitrogen fixation regulatory protein;
           FixJ - Rhizobium loti (Mesorhizobium loti)
          Length = 204

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   AASTKNMTHAALPRSEAFHLRLEVQARARNKRQRGTI-GLPPRSAAFDICLSP 55
           A + +N  HAA P+S     RL   +    +   G + GLP ++ A+D+ +SP
Sbjct: 119 ALANRNQAHAAHPQSADIRDRLSTLSERERQVLDGLVSGLPNKTIAYDLGISP 171


>UniRef50_Q9UBZ9 Cluster: DNA repair protein REV1; n=32;
            Euteleostomi|Rep: DNA repair protein REV1 - Homo sapiens
            (Human)
          Length = 1251

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 13   AALPRSEAFHLRLEVQARARNKRQRGTIGLPPR 45
            A++P++   HL+  V+ + RNK+++ TIG P R
Sbjct: 1054 ASVPKNPLLHLKAAVKEKKRNKKKK-TIGSPKR 1085


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.320    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,378,342
Number of Sequences: 1657284
Number of extensions: 1382582
Number of successful extensions: 2705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2705
Number of HSP's gapped (non-prelim): 2
length of query: 56
length of database: 575,637,011
effective HSP length: 36
effective length of query: 20
effective length of database: 515,974,787
effective search space: 10319495740
effective search space used: 10319495740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)