GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001443-TA|BGIBMGA001443-PA|undefined
         (56 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   3.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           18   6.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 19  EAFHLRLEVQARARNKRQR 37
           E FH  LE+  RA N  Q+
Sbjct: 696 ENFHTALEIMNRAVNIGQQ 714


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 33 NKRQRGTIGLPPR 45
          N R  G  G PP+
Sbjct: 3  NNRNTGNAGAPPQ 15


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,546
Number of Sequences: 317
Number of extensions: 259
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 56
length of database: 114,650
effective HSP length: 36
effective length of query: 20
effective length of database: 103,238
effective search space:  2064760
effective search space used:  2064760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)