GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001443-TA|BGIBMGA001443-PA|undefined
         (56 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   2.8  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    23   6.4  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 1   MEPAASTKNMTHAALPRSEAFHLRLEVQARARNKRQRGTIGLPP 44
           +  +AS+ N+T    P S     R E      N    G+  LPP
Sbjct: 249 LHSSASSANVTEGVQPSSSNAARRTEASVLTSNATTAGSGELPP 292


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 12  HAALPRSEAFHLRLEVQARARNKRQRGTIGLPPRSAAFD 50
           H   PR +   LR  ++ R   KR+   I  PP S   D
Sbjct: 474 HFRKPRDQDNLLRNYIRLRDDIKRRESKISNPPESLLHD 512


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,268
Number of Sequences: 5004
Number of extensions: 5022
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 56
length of database: 2,362,478
effective HSP length: 37
effective length of query: 19
effective length of database: 2,177,330
effective search space: 41369270
effective search space used: 41369270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)