GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001443-TA|BGIBMGA001443-PA|undefined
         (56 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    27   1.9  
12_01_0301 - 2280215-2281154,2281271-2281338                           27   2.6  
02_02_0247 + 8261735-8261873,8261932-8261975,8262100-8262224,826...    26   4.5  
07_03_1416 - 26415330-26417153                                         25   7.8  

>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2   EPAASTKNMTHAA-LPRSEAFHLRLEVQARARNKRQRGTIGLPPRSAAFDICLSPT 56
           E +A    M ++  LP SE  ++   +Q +  +K+ + +I  PPR    + CLSPT
Sbjct: 463 ETSAKVDQMDNSCFLPLSEIINVPTRLQ-KGLDKKPK-SINSPPRPQDNETCLSPT 516


>12_01_0301 - 2280215-2281154,2281271-2281338
          Length = 335

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 3   PAASTKNMTHAALPRSEAFHLRLEVQARARN 33
           P  S +N+ H A P ++ F   L    RARN
Sbjct: 296 PIFSCQNIAHIAYPSNQCFASTLRSSLRARN 326


>02_02_0247 +
          8261735-8261873,8261932-8261975,8262100-8262224,
          8262331-8262391,8262434-8262442
          Length = 125

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 4  AASTKNMTHAALPRSEAFHLRLEVQARARNKRQRGTIGLPP 44
          AA+  + T AA+   +     LE QA A +K Q+GT+  PP
Sbjct: 3  AAAASSSTPAAVREMQR---DLESQANALSKIQKGTLETPP 40


>07_03_1416 - 26415330-26417153
          Length = 607

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 13 AALPRSEAFHLRLEVQAR 30
          AALP  +A H RLE  AR
Sbjct: 13 AALPEQQAVHARLEKSAR 30


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,698
Number of Sequences: 37544
Number of extensions: 41671
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 4
length of query: 56
length of database: 14,793,348
effective HSP length: 36
effective length of query: 20
effective length of database: 13,441,764
effective search space: 268835280
effective search space used: 268835280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)