GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001442-TA|BGIBMGA001442-PA|undefined
         (49 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   1.2  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    19   3.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    19   3.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   3.8  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    19   5.0  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    18   6.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    18   6.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    18   6.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    18   6.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 1.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 13  KTPNKKETMKTFKLHLKEKSA 33
           K P+ K+ +  F L++KE  A
Sbjct: 475 KKPHIKKPLNAFMLYMKEMRA 495


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 1.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 13  KTPNKKETMKTFKLHLKEKSA 33
           K P+ K+ +  F L++KE  A
Sbjct: 367 KKPHIKKPLNAFMLYMKEMRA 387


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 73

 Score = 19.0 bits (37), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 21 MKTFKLHLKEKSALPYQRKVALQNM 45
          +K F+L  K K+  P Q    LQ +
Sbjct: 31 LKNFRLCKKHKTKKPVQILALLQEI 55


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 596

 Score = 19.0 bits (37), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 21 MKTFKLHLKEKSALPYQRKVALQNM 45
          +K F+L  K K+  P Q    LQ +
Sbjct: 31 LKNFRLCKKHKTKKPVQILALLQEI 55


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.0 bits (37), Expect = 3.8
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 6   WTLRLTGKTPNKKETMKTFKLHLK--EKSALPYQ-RKVALQNM 45
           + +RL G + +KK+ +++  L +K   KS +P     + LQN+
Sbjct: 129 YDIRLWGVSFSKKQILRSDDLAVKTTSKSLVPTPVTHIFLQNL 171


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 17  KKETMKTFKLHLKEKSALPYQR 38
           +KET +    HL +K A  ++R
Sbjct: 81  QKETAEKVIRHLTQKRARDWER 102


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 228

 Score = 18.2 bits (35), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 19 ETMKTFKLHLKEKSALPYQ 37
          ET+K +KL+  EK    Y+
Sbjct: 68 ETLKRYKLNDLEKRREVYE 86


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 18.2 bits (35), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 19  ETMKTFKLHLKEKSALPYQ 37
           ET+K +KL+  EK    Y+
Sbjct: 228 ETLKRYKLNDLEKRREVYE 246


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 18.2 bits (35), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 19  ETMKTFKLHLKEKSALPYQ 37
           ET+K +KL+  EK    Y+
Sbjct: 228 ETLKRYKLNDLEKRREVYE 246


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
          nuclear receptor protein.
          Length = 407

 Score = 18.2 bits (35), Expect = 6.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 11 TGKTPNKKET 20
          +G TPNK  T
Sbjct: 61 SGNTPNKSST 70


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9888
Number of Sequences: 317
Number of extensions: 214
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 49
length of database: 114,650
effective HSP length: 30
effective length of query: 19
effective length of database: 105,140
effective search space:  1997660
effective search space used:  1997660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)