GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001442-TA|BGIBMGA001442-PA|undefined
         (49 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   2.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   3.7  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   6.5  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    22   8.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    22   8.6  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 8    LRLTGKTPNKKETMKT 23
            +RL GKTPN  ET+ T
Sbjct: 2454 IRLLGKTPNVLETILT 2469


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 15  PNKKETMKTFKLHLKEKSALPYQRKVALQNMAD 47
           P+  ++      H++ + ALPYQ    L  MAD
Sbjct: 553 PSAHDSASAPSPHMQSQQALPYQYYNPLPAMAD 585


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 14  TPNKKETMKTFKLHLKEKSALPYQRKVA 41
           +P +  ++ + KL +KE  A  Y R VA
Sbjct: 591 SPGRSLSLASSKLSVKEAGARVYNRSVA 618


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 9   RLTG-KTPNKKETMKTFKLHLKEKS 32
           R+ G K PN++ T+K  K++L E+S
Sbjct: 359 RMMGDKEPNEEITIKMDKINLGERS 383


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 1    MTASRWTLRLTGKTPNKKETMKTFKLHLKEKSALPYQRKVALQ 43
            +T  +    L G+  + K    +     KE+SALP    V L+
Sbjct: 1332 ITEEKTAQLLAGRHDDSKAETDSLAASYKEESALPVASNVGLR 1374


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,378
Number of Sequences: 5004
Number of extensions: 4698
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 5
length of query: 49
length of database: 2,362,478
effective HSP length: 30
effective length of query: 19
effective length of database: 2,212,358
effective search space: 42034802
effective search space used: 42034802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)