GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001442-TA|BGIBMGA001442-PA|undefined
         (49 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,482...    26   4.3  
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008...    25   5.7  
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509...    25   7.5  

>02_01_0645 +
           4820461-4820736,4821034-4821086,4821670-4821876,
           4821975-4822055,4822137-4822302
          Length = 260

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 5   RWTLRLTGKTPNKKETMKTFKLHLKEKS 32
           RW  R T   P+KKE ++     +K+K+
Sbjct: 121 RWAQRRTSSKPDKKEPLEVEDKDIKQKA 148


>09_02_0523 +
           10196272-10196375,10196551-10197488,10200247-10200896,
           10201003-10201746
          Length = 811

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 6   WTLRLTGKTPNKKETMKTFKLHLKEKSALPYQRKVALQNMADI 48
           W   LTGK  +   T   F + ++  + +PY  K+    M  I
Sbjct: 356 WNRDLTGKGDSHGRTPLHFAVSIEPPTKIPYYHKILFSIMRHI 398


>03_05_0807 +
           27849637-27849823,27850002-27850294,27850736-27850973,
           27851075-27851410,27851496-27851581,27851678-27851785,
           27851878-27852185,27852265-27852528,27852610-27853381
          Length = 863

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 11  TGKTPNKKETMKTFKLHLKEKSALPYQRKVALQNMAD 47
           TG+ P KK+     +L L E+  +P   + A   M+D
Sbjct: 232 TGRIPTKKDPNSESRLSLLEQIYVPSDERFAHLKMSD 268


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,067
Number of Sequences: 37544
Number of extensions: 25214
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 14,793,348
effective HSP length: 30
effective length of query: 19
effective length of database: 13,667,028
effective search space: 259673532
effective search space used: 259673532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)