GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001442-TA|BGIBMGA001442-PA|undefined
         (49 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_47912| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  25   8.8  

>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 9   RLTGKTPNKKE---TMKTFKLHLKEKS 32
           R  GKTPNK E   TMK     LK+KS
Sbjct: 98  RTGGKTPNKPEHQTTMKKLHRKLKQKS 124


>SB_47912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 17 KKETMKTFKLHLKEKSALPYQRKVALQNM 45
          + E   TF LH+  +   P QR V +Q M
Sbjct: 33 RDEHSTTFNLHVPARRTYPRQRLVVVQGM 61


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 7   TLRLTGKTPNKKETMKTFKLHLKEKSALPYQRKVALQNMAD 47
           +L+ T K  +++  ++   LH K+  AL Y RKV ++ M D
Sbjct: 308 SLKETSKLASRESNLE--HLHGKKNKALCYFRKVNIKAMCD 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,138
Number of Sequences: 59808
Number of extensions: 32940
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 16,821,457
effective HSP length: 29
effective length of query: 20
effective length of database: 15,087,025
effective search space: 301740500
effective search space used: 301740500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)