GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001442-TA|BGIBMGA001442-PA|undefined
         (49 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88902-2|AAC79121.1|  467|Homo sapiens putative envelope protein...    27   9.1  
AY050297-1|AAL11491.1|  402|Homo sapiens envelope protein protein.     27   9.1  
AF108843-2|AAD34324.1|  584|Homo sapiens env protein protein.          27   9.1  

>U88902-2|AAC79121.1|  467|Homo sapiens putative envelope protein
           protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 6   WTLRLTGKTPNKKETMKTFKLHLKEKSAL 34
           +TL L   T N  ET+  F+LH+ +K ++
Sbjct: 187 FTLHLRSPTTNINETIGAFQLHITDKPSI 215


>AY050297-1|AAL11491.1|  402|Homo sapiens envelope protein protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 6   WTLRLTGKTPNKKETMKTFKLHLKEKSAL 34
           +TL L   T N  ET+  F+LH+ +K ++
Sbjct: 187 FTLHLRSPTTNINETIGAFQLHITDKPSI 215


>AF108843-2|AAD34324.1|  584|Homo sapiens env protein protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 6   WTLRLTGKTPNKKETMKTFKLHLKEKSAL 34
           +TL L   T N  ET+  F+LH+ +K ++
Sbjct: 187 FTLHLRSPTTNINETIGAFQLHITDKPSI 215


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,131,059
Number of Sequences: 224733
Number of extensions: 150584
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 73,234,838
effective HSP length: 30
effective length of query: 19
effective length of database: 66,492,848
effective search space: 1263364112
effective search space used: 1263364112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)