GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001442-TA|BGIBMGA001442-PA|undefined
         (49 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    25   4.7  
At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domai...    25   8.2  

>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 15  PNKKETMKTFKLHLKEKSALPYQR 38
           P+K+E  K FK  LKE+   P+ +
Sbjct: 361 PSKEECSKQFKEMLKERGIAPFSK 384


>At3g63000.1 68416.m07077 NPL4 family protein contains Pfam domain,
           PF05021: NPL4 family
          Length = 413

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)

Query: 16  NKKETMKTFKLHLKEKSALPYQRKVA 41
           N + TM+  K H++   +LP+ ++++
Sbjct: 342 NTQTTMRALKTHMERARSLPFVKRIS 367


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,947
Number of Sequences: 28952
Number of extensions: 23720
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 2
length of query: 49
length of database: 12,070,560
effective HSP length: 30
effective length of query: 19
effective length of database: 11,202,000
effective search space: 212838000
effective search space used: 212838000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)