GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001441-TA|BGIBMGA001441-PA|undefined
         (197 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53238| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_33779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_53238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 105 LIGGEPCERTLHEILGLDAMVARVHYEFADILGRYDCDQAYSVH-SCYECQ 154
           L+    C   L  IL +D      +  F  I+ R DC+ AYSV  +C +C+
Sbjct: 81  LMNSSICTEILWGILRVDQSAFSDYNVFQAIMSRVDCNFAYSVRWTCADCK 131


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 104 MLIGGEPCERTLHEILGLDAMVA-RVHYEFADILGRYDCDQAYSVH-SCYE--CQVND 157
           ++IGG     T  +I+G D M++  + + F D+L +Y  D A+  H   YE  CQVN+
Sbjct: 748 VVIGGHRPMYTSQQIIG-DYMISIGMRHYFEDLLLQYKVDMAFWAHYHSYERTCQVNN 804


>SB_33779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 97  HPAARTDMLIGGEPCE------RTLHEILGLDAMVARVHYEFADILGRYDC 141
           H +ART + IGG   E          E   L AMVARVH+ F  ++ R  C
Sbjct: 66  HGSART-LCIGGHAREYFVLVAMVAREYFVLVAMVARVHFVFVAVVAREYC 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,591,945
Number of Sequences: 59808
Number of extensions: 145014
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 3
length of query: 197
length of database: 16,821,457
effective HSP length: 79
effective length of query: 118
effective length of database: 12,096,625
effective search space: 1427401750
effective search space used: 1427401750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)