Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001440-TA|BGIBMGA001440-PA|undefined
         (129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   0.92 
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    26   1.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   2.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    24   6.5  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 0.92
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 75  LEYSY-PVLQLDNTKLAPQRGKDNTKLAPQRGKDNTKLAPQRGKDNTKH 122
           L Y+Y P   ++  +  P   K+ T     RG + T+ +    K+  KH
Sbjct: 543 LPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSISHSKNTDKH 591


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 17/77 (22%)

Query: 45  SSPATTEAYTREYVRT-SLATIPFRTCLWDPLEYSYPVLQLDNTKLAPQRGKDNTKLAPQ 103
           +SP  T  YT    R+ +L ++PF T            L LD+  L P +  D   +AP+
Sbjct: 46  ASPPKTHIYTSPRKRSVNLKSLPFET------------LTLDSAPLGPLQFSDAPSMAPE 93

Query: 104 RGK----DNTKLAPQRG 116
             +     NTK+ P +G
Sbjct: 94  NNRLEVGLNTKINPLKG 110


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 32  PLASRVRPFSGADSSPATTEAYTREYVRTSLATIPFRTCLWDPLEYSYPVLQLDNTKLAP 91
           P ASRVR FS    S   +        + SL  IP ++   D    +     +  +KL P
Sbjct: 300 PSASRVRSFSNYVKS---SNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTSTM-TSKLKP 355

Query: 92  QRGKDNTKLAPQRG 105
             G  NT+ AP+ G
Sbjct: 356 SVGLSNTRDAPKPG 369


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 72  WDPLEYSYPVLQLDNTKLAPQRGKDNTKLAPQRGKDNTKLAPQRGKDN 119
           + PL Y+Y V + +   LA QR        P   K+NT  A     +N
Sbjct: 215 YSPLSYAYFVAKANELALANQRQSSEAAEQPS-SKNNTSGANPPSSNN 261


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,087
Number of Sequences: 5004
Number of extensions: 20238
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 5
length of query: 129
length of database: 2,362,478
effective HSP length: 66
effective length of query: 63
effective length of database: 2,032,214
effective search space: 128029482
effective search space used: 128029482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)