GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001440-TA|BGIBMGA001440-PA|undefined
         (129 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   3.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   3.7  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 95  KDNTKLAPQRGKDNTKLAPQRGKDNTKHKTGAST 128
           +D  K     G  N     +   D+T H  GAST
Sbjct: 36  RDGGKPPELTGSTNGDGGARSNADSTSHTDGAST 69


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 95  KDNTKLAPQRGKDNTKLAPQRGKDNTKHKTGAST 128
           +D  K     G  N     +   D+T H  GAST
Sbjct: 192 RDGGKPPELTGSTNGDGGARSNADSTSHTDGAST 225


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,508
Number of Sequences: 317
Number of extensions: 908
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 129
length of database: 114,650
effective HSP length: 50
effective length of query: 79
effective length of database: 98,800
effective search space:  7805200
effective search space used:  7805200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)