GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001440-TA|BGIBMGA001440-PA|undefined
         (129 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   2.1  
04_01_0255 - 3395548-3396129,3396203-3397834                           27   6.3  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    26   8.3  

>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 38   RPFSGADSSPATTEAYTREYVRTSLATIPFRTCLWDPLEYSYPVLQLDNTKL--APQRGK 95
            +P S A +S     + + E  +T   + PF    WD  + +  V+ L  T+L  A + GK
Sbjct: 1617 QPSSDAVNSGKLVTSLSEENNKTMPISTPFNIGTWDNSQLNQQVMPLTQTQLEEAMKPGK 1676

Query: 96   DNTKLAPQRGKDNTKLAPQRGKDNT 120
                 +    + N  L+P  G + T
Sbjct: 1677 FEQAGSGFSLEPNNALSPTLGSEKT 1701


>04_01_0255 - 3395548-3396129,3396203-3397834
          Length = 737

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 70  CLWDPLEYSYPVLQLDNTKLAPQRGKDNTKLAPQRGKDNTKLAP 113
           C+WD +  +YPV  ++  K   +  K   K      K +  + P
Sbjct: 445 CIWDYMYLAYPVEDVEEKKKEKEEKKKKKKKGTAEKKPDPPMKP 488


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 42   GADSSPATTEAYTREYVRTSLATIPFRTC 70
            G ++ P   E+ T+++ RTSL+  P  TC
Sbjct: 2170 GWEALPEELESPTKKHGRTSLSVDPLHTC 2198


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,015
Number of Sequences: 37544
Number of extensions: 128627
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 14,793,348
effective HSP length: 74
effective length of query: 55
effective length of database: 12,015,092
effective search space: 660830060
effective search space used: 660830060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)