GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001440-TA|BGIBMGA001440-PA|undefined
         (129 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3069|AAF57422.1|  436|Drosophila melanogaster CG13443-P...    29   1.9  
AE014298-2104|AAF48424.1| 2075|Drosophila melanogaster CG5627-PA...    29   2.5  

>AE013599-3069|AAF57422.1|  436|Drosophila melanogaster CG13443-PA
           protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 32  PLASRVRPFSGADSSPATTEAYTREYVRTSLATIPFRTCLWDPLEYSYPVLQLDNTKLAP 91
           P  ++V   + A ++PA  E+ T   V+ ++A  P  T +  P   S  + QL +   A 
Sbjct: 206 PAKNKVGEVNAAATAPAG-ESLTS--VKKTMA--PSETIIDKP---STGMQQLVSPTTAE 257

Query: 92  QRGKDNTKL-APQRGKDNTKLAPQRGKDNTKHK---TGAST 128
             G   TK  + QR KD  K  P R +  TK K   TGA T
Sbjct: 258 NAGDTGTKAQSGQRRKDEQKAGPSRPRPKTKRKQRPTGAPT 298


>AE014298-2104|AAF48424.1| 2075|Drosophila melanogaster CG5627-PA
           protein.
          Length = 2075

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 54  TREYVRTSLATIPFRTCLWDPLEYSYPVLQLDNTKLA 90
           +R+Y   S++ + F T L+ PLEY +PV+ L  T L+
Sbjct: 377 SRDYNALSMSVMAFVTMLY-PLEYMFPVIPLLPTCLS 412


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,872,042
Number of Sequences: 52641
Number of extensions: 218232
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 24,830,863
effective HSP length: 77
effective length of query: 52
effective length of database: 20,777,506
effective search space: 1080430312
effective search space used: 1080430312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)