GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001440-TA|BGIBMGA001440-PA|undefined
         (129 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z34533-8|CAA84297.2|  616|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AY552607-1|AAS89254.1|  616|Caenorhabditis elegans heparan sulfa...    26   7.3  

>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 73  DPLEYSYPVLQLDNTKLAPQRGKDNTKLAPQRG 105
           D L +  PVLQ + TKLA   G+ N  + P  G
Sbjct: 29  DMLRFRSPVLQTNTTKLARYGGRHNVTVLPGDG 61


>Z34533-8|CAA84297.2|  616|Caenorhabditis elegans Hypothetical
           protein B0285.5 protein.
          Length = 616

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 48  ATTEAYTREYVR--TSLATIPFRTCLWDPLEYSYPV 81
           +T    TR+ VR  ++   +P  T  WDP+ Y YP+
Sbjct: 134 STYSVETRDRVRCVSAKTDVPMST-QWDPIPYYYPI 168


>AY552607-1|AAS89254.1|  616|Caenorhabditis elegans heparan sulfate
           C5-glucuronyl epimeraseprotein.
          Length = 616

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 48  ATTEAYTREYVR--TSLATIPFRTCLWDPLEYSYPV 81
           +T    TR+ VR  ++   +P  T  WDP+ Y YP+
Sbjct: 134 STYSVETRDRVRCVSAKTDVPMST-QWDPIPYYYPI 168


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,985
Number of Sequences: 27539
Number of extensions: 106550
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 12,573,161
effective HSP length: 74
effective length of query: 55
effective length of database: 10,535,275
effective search space: 579440125
effective search space used: 579440125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)