GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001440-TA|BGIBMGA001440-PA|undefined
         (129 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-...    29   0.99 
At5g35370.1 68418.m04204 lectin protein kinase family protein co...    29   1.3  
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp...    29   1.3  
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    26   7.0  
At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966, gb|R6...    26   9.3  

>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
           / HD-ZIP transcription factor 16 identical to
           homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
           {Arabidopsis thaliana}
          Length = 294

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 72  WDPLEYSYPVLQLDNTKLAPQRGKDNTKLAPQRGKDNTKLAPQRGKDNTKHKT 124
           +D L +++  L+ DN  L  +  K   K+  +   +N K   +  K+   HKT
Sbjct: 127 YDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEGVKEEEVHKT 179


>At5g35370.1 68418.m04204 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 870

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 39  PFSGADSSPATTEAYTREYVRTSLATIPFRTCLWDPLEYSYPVL 82
           P S + S P + EA    Y+   L    F T   DP+E+  P+L
Sbjct: 325 PVSQSLSLPVSCEARNISYLELGLGVSYFSTHFTDPVEHGLPLL 368


>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / D111/G-patch
           domain-containing protein contains Pfam profiles
           PF01585: G-patch domain, PF01805: Surp module
          Length = 443

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 59  RTSLATIPFRTCLWDPLEYSYPVLQLDNTKLAPQRGKDNTKLAPQRGKDNTKLAPQRGKD 118
           RTS A IP +   +    Y  P   L +T + P     + + +  R  D+   +  RG D
Sbjct: 213 RTSTAAIPLQKPAYQQTGYQIPASALYDTPVEPGASSRSAQASITRPSDSDSFSGPRGAD 272


>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 49  TTEAYTREYVRTSLATIPFRTCLWDPLEYSYPVLQLDNTKLAPQR 93
           T ++   EY  T L  IP R    DP   +YP   L +  L P++
Sbjct: 58  TEQSTAEEYSATPLTIIPPRVSNQDPRSINYP--SLTSNPLPPRK 100


>At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966,
          gb|R65511, gb|T42324 and gb|T20569 come from this gene
          Length = 571

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 29 GAFPLASRVRPFSGADSSPATTEA 52
          G   +ASR RPF GA  S A+T +
Sbjct: 75 GLEDVASRCRPFLGASGSKASTSS 98


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,908
Number of Sequences: 28952
Number of extensions: 100670
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 5
length of query: 129
length of database: 12,070,560
effective HSP length: 73
effective length of query: 56
effective length of database: 9,957,064
effective search space: 557595584
effective search space used: 557595584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)