Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001439-TA|BGIBMGA001439-PA|undefined
         (195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   5.9  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   5.9  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   5.9  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   5.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   5.9  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   5.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 19  YEKESRLRAKWFNLHKEKIEKCAT 42
           Y +E + R KW  +H+ +    AT
Sbjct: 343 YRQELQKRCKWMGIHEPETTSDAT 366


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESE 138
           SEK I+ E+   ++    K   D KYLYM  E
Sbjct: 415 SEKRIMGEADCDFVVKLFKTFKDRKYLYMLME 446


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 19  YEKESRLRAKWFNLHKEKIEKCAT 42
           Y +E + R KW  +H+ +    AT
Sbjct: 343 YRQELQKRCKWMGIHEPETTSDAT 366


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 24  NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 83

Query: 167 SL 168
           SL
Sbjct: 84  SL 85


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 24  NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 83

Query: 167 SL 168
           SL
Sbjct: 84  SL 85


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 24  NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 83

Query: 167 SL 168
           SL
Sbjct: 84  SL 85


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 24  NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 83

Query: 167 SL 168
           SL
Sbjct: 84  SL 85


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 257 NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 316

Query: 167 SL 168
           SL
Sbjct: 317 SL 318


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 257 NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 316

Query: 167 SL 168
           SL
Sbjct: 317 SL 318


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 257 NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 316

Query: 167 SL 168
           SL
Sbjct: 317 SL 318


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 257 NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 316

Query: 167 SL 168
           SL
Sbjct: 317 SL 318


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 257 NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 316

Query: 167 SL 168
           SL
Sbjct: 317 SL 318


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 246 NEKEKLLEERTSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIIS 305

Query: 167 SL 168
           SL
Sbjct: 306 SL 307


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 17/65 (26%), Positives = 25/65 (38%)

Query: 107 SEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLLH 166
           +EK+ L E + S       R  + K    E E  KYG    E        E  K   ++ 
Sbjct: 246 NEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKYGKTSKERSRDRMERERSKEPKIIS 305

Query: 167 SLVSR 171
           SL ++
Sbjct: 306 SLSNK 310


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 134 YMESENWKYGWKLNESELKLRGP 156
           Y +  NW  GWK   SE  L  P
Sbjct: 668 YDQVTNWYMGWKGMLSEKILAEP 690


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,715
Number of Sequences: 429
Number of extensions: 2674
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 15
length of query: 195
length of database: 140,377
effective HSP length: 54
effective length of query: 141
effective length of database: 117,211
effective search space: 16526751
effective search space used: 16526751
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)