GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001439-TA|BGIBMGA001439-PA|undefined
         (195 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    30   0.94 
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    30   1.2  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    29   2.2  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    29   2.2  
Z70783-10|CAA94857.2|  455|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80955-9|AAN65296.1|  863|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80955-8|AAN65295.1|  881|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    28   5.0  
AF025468-7|AAB71044.1|  248|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U29488-9|AAA68778.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    27   8.8  

>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 31  NLHKEKIEKCATLKVDTKNYTHSDIAEATMI-SGMEAITRDH---VSAVIHRFRKPVPDY 86
           + +KE I++CA +  +    T S I+  T++    E +  +      A + + +  + DY
Sbjct: 19  SFNKESIKECAKVLSEHMKETFSKISHETILKQNYEKLVEEEQFDPRAELKKSKHRIEDY 78

Query: 87  LLAKVETVRKIQPPMIA-ATSSEKDILKESKKSYLN-MRNKRGPDDKYLYMESENWKYGW 144
           L  + +   K +  + A +  ++  +     KS++  M  K+G D   +Y ES +     
Sbjct: 79  LKVRSQFAYKAKISLEARSVRNDSTVNDPQSKSFIRFMSAKQGNDGTTIY-ESNHLGKRL 137

Query: 145 KLNESE 150
           K+NE++
Sbjct: 138 KVNETK 143


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans homeobox
            protein 44,isoform a protein.
          Length = 1273

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 40   CATLKVDTKNYTHSDIAEATMISGMEAITRDHVSAVIHRFRKPVPDYLLAKVETV---RK 96
            CA L + TK++ +S  +E  M + M+    D ++  +   ++   + + AK+E+V   R+
Sbjct: 1022 CADLMIRTKSFENSKASEKLMYTRMKTFLSDPIAIPLLVEKEESKETVKAKIESVPAPRE 1081

Query: 97   IQPPMIAATSSEKD 110
               P+    SS+ D
Sbjct: 1082 APRPVKRKHSSDTD 1095


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 5   DVSNPKVINFLIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSDIAEA 58
           DVS   ++ FL+  Y+K++  R   F++       CA   VD   Y  S IA++
Sbjct: 126 DVSISLLLAFLLGAYDKQNTGRLTVFSIKVALATLCAGKLVDKLRYIFSQIADS 179


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 5   DVSNPKVINFLIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSDIAEA 58
           DVS   ++ FL+  Y+K++  R   F++       CA   VD   Y  S IA++
Sbjct: 126 DVSISLLLAFLLGAYDKQNTGRLTVFSIKVALATLCAGKLVDKLRYIFSQIADS 179


>Z70783-10|CAA94857.2|  455|Caenorhabditis elegans Hypothetical
           protein ZK856.9 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 46  DTKNYTHSDIAEATMISGMEAITRDHVSAVIHRFRKPVPDYLLAKVETVRK--IQPPMIA 103
           ++++  HSD    T+    +  T D    V  +    +P+ +  +V TV K   +P    
Sbjct: 214 ESRHEQHSDTIFWTLKLSFKKQTADGGIEVFEKIVNNIPETI--RVATVLKQFFKPRQYG 271

Query: 104 ATSSEKDILKESKKSYLNMRNKRGPDDKYLYME 136
              SE D+  E  K +++    RG DD  +YME
Sbjct: 272 CIVSESDLDVEKLKPFID----RGIDDVNVYME 300


>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 4   MDVSNPKVINFLIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSDIAEATMISG 63
           +D  + KVI       ++++RL+++  +L K K+E    +  D K      +A A   + 
Sbjct: 692 LDKEHLKVIAKSQRELQEKTRLKSEVVDLKKAKVELIKKMNEDKKKQKTQQLANARAFAT 751

Query: 64  MEAITR 69
            E  TR
Sbjct: 752 KEKQTR 757


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 4   MDVSNPKVINFLIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSDIAEATMISG 63
           +D  + KVI       ++++RL+++  +L K K+E    +  D K      +A A   + 
Sbjct: 692 LDKEHLKVIAKSQRELQEKTRLKSEVVDLKKAKVELIKKMNEDKKKQKTQQLANARAFAT 751

Query: 64  MEAITR 69
            E  TR
Sbjct: 752 KEKQTR 757


>U80955-9|AAN65296.1|  863|Caenorhabditis elegans Hypothetical
           protein T04C9.1b protein.
          Length = 863

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 71  HVSAVIHRFRKPVPDYLLAKVETVRKIQPPMIAATSSEKDILKESKKSYLNMRNKRGPDD 130
           HV +VIH+  KP  D +  KV+  ++       AT++E +   E KK  L    K G +D
Sbjct: 212 HVGSVIHQDFKPFLDNVQTKVQKTKE----NYNATNAEAE---ELKKKLLASHTKPGSED 264

Query: 131 K 131
           +
Sbjct: 265 R 265


>U80955-8|AAN65295.1|  881|Caenorhabditis elegans Hypothetical
           protein T04C9.1a protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 71  HVSAVIHRFRKPVPDYLLAKVETVRKIQPPMIAATSSEKDILKESKKSYLNMRNKRGPDD 130
           HV +VIH+  KP  D +  KV+  ++       AT++E +   E KK  L    K G +D
Sbjct: 212 HVGSVIHQDFKPFLDNVQTKVQKTKE----NYNATNAEAE---ELKKKLLASHTKPGSED 264

Query: 131 K 131
           +
Sbjct: 265 R 265


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
           protein KLP-12 protein.
          Length = 1609

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 4   MDVSNPKVINFLIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSDIAEATMISG 63
           +D  + KVI       ++++RL+++  +L K K+E    +  D K      +A A   + 
Sbjct: 696 LDKEHLKVIAKSQRELQEKTRLKSEVVDLKKAKVELIKKMNEDKKKQKTQQLANARAFAT 755

Query: 64  MEAITR 69
            E  TR
Sbjct: 756 KEKQTR 761


>AF025468-7|AAB71044.1|  248|Caenorhabditis elegans Hypothetical
           protein T27A1.3 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 12  INFLIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSDIA 56
           INF   NY+KE++L    +   +E I   + L  D+ +  H D+A
Sbjct: 135 INFFCTNYKKENKLPCMPYKTSQELISYLSILN-DSFSIDHVDLA 178


>Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical
           protein H03G16.5 protein.
          Length = 227

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 79  FRKPVPDYLLAKVETVRKIQPPMIAATSSEKDILKESKKSYLNMRNKRGPDDKYLYMESE 138
           F + + D LL   E +++I    +       ++L+   + +L ++NK    DKY  M   
Sbjct: 49  FHQNIADKLLKVNEDMKEISKKKVFKMDDTMNLLRLGTRVHLIIQNKEELIDKYKAMLEN 108

Query: 139 NWKYGWKLNES 149
           N  +   L E+
Sbjct: 109 NQNHKNTLRET 119


>U29488-9|AAA68778.1|  342|Caenorhabditis elegans Hypothetical
           protein C56C10.10 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 6   VSNPKVINF---LIENYEKESRLRAKWFNLHKEKIEKCATLKVDTKN-YTHSDIAEATMI 61
           + NP+ + F   L++ +E +  +   W     +K++    L+      +   D  EA + 
Sbjct: 154 MKNPRPLRFVFHLLQVFEPDQYVHDSWQLDEDDKLKSVEALRQKGNELFVQKDYKEA-ID 212

Query: 62  SGMEAITRDHVSAVIHRFRKPVPDYLLAKVETVRKIQPPMIAATSSEKDI--LKESKKSY 119
           +  +A+TR  +  +I R +   P++    VE  RK  P     +    +I  L E++++ 
Sbjct: 213 AYRDALTR--LDTLILREKPGEPEW----VELDRKNIPLYANMSQCYLNIGDLHEAEETS 266

Query: 120 LNMRNKRGPDDKYLYMESENWKYGWKLNESELKLR 154
             +  +   ++K L+  ++     WKL+E+E  L+
Sbjct: 267 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 301


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 32  LHKEKIEKCATLKVDTKNYTHSDIAEATMISGMEAITRDHVSAVIHRFRKPVPDYLLAKV 91
           L   K+    +LK+  K+  H D  + ++ S + AI +  ++A  + +    P  +    
Sbjct: 623 LELRKVPGTDSLKMHKKSCYHLDERDDSLDSKIGAILKK-LTADKNAWPFASPVDVKEVP 681

Query: 92  ETVRKIQPPMIAATSSEKDILKESKKSYLNMRN-KRGPDDKYLY--MESENWKYGWKLNE 148
           E    I+ P+   T  EK   K     +L + +  R   + Y++   E+  +KYG+KLNE
Sbjct: 682 EYYDHIKHPIDFKTMQEKLKRKAYTHQHLFIADLNRLFQNCYVFNGAEAVYYKYGYKLNE 741

Query: 149 SELKL 153
             LKL
Sbjct: 742 LALKL 746


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,151,479
Number of Sequences: 27539
Number of extensions: 205423
Number of successful extensions: 627
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 14
length of query: 195
length of database: 12,573,161
effective HSP length: 78
effective length of query: 117
effective length of database: 10,425,119
effective search space: 1219738923
effective search space used: 1219738923
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)