GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001439-TA|BGIBMGA001439-PA|undefined
         (195 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68040.1 68414.m07773 S-adenosyl-L-methionine:carboxyl methyl...    30   1.2  
At1g60610.2 68414.m06823 expressed protein                             29   2.7  
At1g60610.1 68414.m06822 expressed protein                             29   2.7  
At1g10650.1 68414.m01207 expressed protein                             29   2.7  
At5g16520.1 68418.m01932 expressed protein                             28   3.6  
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond...    28   4.8  
At2g42490.1 68415.m05256 copper amine oxidase, putative similar ...    27   6.3  
At1g55480.1 68414.m06346 expressed protein                             27   6.3  
At3g13222.1 68416.m01655 expressed protein                             27   8.4  

>At1g68040.1 68414.m07773 S-adenosyl-L-methionine:carboxyl
          methyltransferase family protein similar to
          defense-related protein cjs1 [Brassica
          carinata][GI:14009292],
          S-adenosyl-L-methionine:salicylic acid carboxyl
          methyltransferase [Clarkia breweri][GI:6002712]
          Length = 363

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 18 NYEKESRLRAKWFNLHKEKIEKCATLKVDTKNYTHSD 54
          +Y K S L+ K  +L KEKI+K    K++ K    SD
Sbjct: 21 SYSKNSHLQRKTTSLLKEKIDKLVLEKLNAKTLISSD 57


>At1g60610.2 68414.m06823 expressed protein
          Length = 340

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)

Query: 105 TSSEKDILKE-SKKSY----LNMRNKRGPDD-KYLYMESENWKYGWKLNES 149
           T+ EKD+ K+  +K +    +N +N+   D  K + +E++NW Y  K NES
Sbjct: 180 TALEKDVSKKLQEKDHEIESMNKKNRELVDKIKQVAVEAQNWHYKAKYNES 230


>At1g60610.1 68414.m06822 expressed protein
          Length = 340

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)

Query: 105 TSSEKDILKE-SKKSY----LNMRNKRGPDD-KYLYMESENWKYGWKLNES 149
           T+ EKD+ K+  +K +    +N +N+   D  K + +E++NW Y  K NES
Sbjct: 180 TALEKDVSKKLQEKDHEIESMNKKNRELVDKIKQVAVEAQNWHYKAKYNES 230


>At1g10650.1 68414.m01207 expressed protein
          Length = 339

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 94  VRKIQPPMIAA--TSSEKDILK--ESKKSYLNMRNKRGPD----DKYLYMESENWKYGWK 145
           VR ++   IA+  T+ EK + K  + K   +N  NK+  +     K + ME++NW Y  K
Sbjct: 168 VRDMKQRHIASFLTTLEKGVSKKLQEKDHEINDMNKKNKELVERIKQVAMEAQNWHYRAK 227

Query: 146 LNES 149
            NES
Sbjct: 228 YNES 231


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 121 NMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPE 157
           N  +K GP++K++   S   + G  L+ES +  RG E
Sbjct: 273 NFTSKNGPNEKHMSFVSGTLRNGSILDESPVTFRGTE 309


>At4g27680.1 68417.m03980 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 398

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 46  DTKNYTHSDIAEATMISGMEAITRDHVSAVIHRFRKP---VPDYLLAKVETVRKIQPPMI 102
           D  N  H D+ E   I G+E I +     VI   ++P       LL   + V    PP  
Sbjct: 72  DVINPDHIDV-EFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGT 130

Query: 103 AATSSEKDILKESKKSYLNMR 123
             T   K I KES   ++N+R
Sbjct: 131 GKTMLAKAIAKESGAVFINVR 151


>At2g42490.1 68415.m05256 copper amine oxidase, putative similar to
           copper methylamine oxidase precursor (MAOXII)
           [Arthrobacter sp.] SWISS-PROT:Q07123
          Length = 776

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 92  ETVRKIQPPMIAATSSEKDILKESKKSYLNMRNKRGPDDKYLYMESENWKYGW 144
           + +  +QPPM AA  +E + + +    ++    +RG +D  L M  + W  G+
Sbjct: 198 QVIPDVQPPMDAAEYAECEAIVKDFPPFIEAMKRRGIEDMDLVM-VDPWCVGY 249


>At1g55480.1 68414.m06346 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 107 SEKDILK-ESKKSYLNMRNKRGPDDKYLYMESENWKYGWKLNESELKLRGPEHGKINHLL 165
           +EK+I++ E    Y++ R +      YL  + +  +    L E    L+  ++GK    L
Sbjct: 181 TEKEIIRAERNAGYISSRLREIQMQNYLKKKEQKAQREKDLREG---LQFSKNGKYEEAL 237

Query: 166 HSLVSRVGPQPDPVHYALPDTGYECC 191
               S +G +P P   ++      CC
Sbjct: 238 ERFESVLGSKPTPEEASVASYNVACC 263


>At3g13222.1 68416.m01655 expressed protein
          Length = 567

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 83  VPDYLLAKVETVRKIQPPMIAATSSEKDILKESK 116
           + D +++ V+ V   + P+  ATSS KD+++  K
Sbjct: 155 IQDAIISPVDKVDTEEQPLSKATSSSKDVVEPDK 188


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,927,142
Number of Sequences: 28952
Number of extensions: 197312
Number of successful extensions: 529
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 9
length of query: 195
length of database: 12,070,560
effective HSP length: 77
effective length of query: 118
effective length of database: 9,841,256
effective search space: 1161268208
effective search space used: 1161268208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)