Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001438-TA|BGIBMGA001438-PA|IPR009730|Micro-fibrillar-
associated 1, C-terminal
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    95   1e-20
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   4.0  
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb...    26   9.1  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   9.1  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 95.5 bits (227), Expect = 1e-20
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 260 EQKEGN--INDVC-TDDENDELEYEAWKLXXXXXXXXXXXXXXXXXXXXLTLERLRNMTE 316
           E K  N  +ND+  TD  + + EYE WKL                    + +E  R M  
Sbjct: 171 ETKNNNELLNDIDDTDGIDPQSEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLMNS 230

Query: 317 DERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEEDVFKQDFSGPTLDDHFDKT 376
           +ER  +   + +       K   +FLQKYYH+GAFY   E+ V K+D+S  T  +  +K 
Sbjct: 231 EEREAQDLKDAEASRRGKKKSSMQFLQKYYHKGAFY-QNEDIVSKRDYSEATEGEVLNKD 289

Query: 377 VLPKVMQVK--KFGRSGRTKYTHLVDQDTTEFDSAWSNETSAARLTNFR--GGMKQVFEK 432
           +LPK MQ++   F ++G+T++THL ++DTT+  SAW +  +     N    GG+    + 
Sbjct: 290 LLPKPMQIRGDLFAKAGQTRWTHLANEDTTKEGSAWYDPKNPILQKNLHRLGGLHS--DS 347

Query: 433 PSAERK 438
           P ++RK
Sbjct: 348 PLSKRK 353


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 76  ITRKEEHHSDSEKEVDDPRLRRLRNIAQSPPRRAEHKPEIIDAEPEAE 123
           + R++E   + EK+ +  RLR   NI  +   +  +   II+ +P+ E
Sbjct: 26  LERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEE 73


>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 185 SSDTEYTDSEEDTGPRVKPVFVRASERMTVAERERKM 221
           + DT+Y    +D G ++K  F + SE +    R   M
Sbjct: 78  AKDTDYQQKAKDAGKKIKEEFSQRSENVLEETRREGM 114


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 412 NETSAARLTNFRGGMKQVFEKPSAERK 438
           NE+ A  L N RGG K     P   +K
Sbjct: 73  NESQAKNLGNVRGGYKAAMHNPKVSQK 99


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 2   NVLPAQPTGIQSTAGAIPIRNEKGEISMQKVKVQRYISGKKPDYA--QGMXX--XXXXXX 57
           +V+P QP   +    A+   NE  + +M++ +++R  +   P  A   G+          
Sbjct: 308 DVVPPQPPQPEHELAALQEHNEAHDAAMRQYELERQQNAMLPGLASIDGLQALPHLDFSD 367

Query: 58  XXFIEQQRPERKQVLPQIITRKEEHHSDSEKEVDDPRLRRLRNIAQSPP 106
                Q   + +  L  +I++ E H   S        +    N+A +PP
Sbjct: 368 SAVTNQSHSQSQNSLHPLISQSETHSIFSALSETPTPVSGNGNVADAPP 416


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,877
Number of Sequences: 5004
Number of extensions: 56057
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 5
length of query: 441
length of database: 2,362,478
effective HSP length: 75
effective length of query: 366
effective length of database: 1,987,178
effective search space: 727307148
effective search space used: 727307148
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)