Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001438-TA|BGIBMGA001438-PA|IPR009730|Micro-fibrillar-
associated 1, C-terminal
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0445 - 10351483-10351606,10351987-10353170 174 1e-43
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 70 4e-12
02_02_0526 + 11185825-11186832,11187795-11187869 52 7e-07
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 30 3.2
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 30 3.2
06_01_0487 - 3459853-3459917,3460058-3460408,3460991-3461114,346... 30 4.2
02_05_0021 - 25101738-25101881,25119662-25120331,25122562-251237... 30 4.2
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 29 5.6
02_05_0255 - 27184306-27184914,27185009-27185272 29 5.6
06_02_0217 + 13170731-13170826,13170886-13171203 29 7.4
>02_02_0445 - 10351483-10351606,10351987-10353170
Length = 435
Score = 174 bits (424), Expect = 1e-43
Identities = 106/268 (39%), Positives = 145/268 (54%), Gaps = 16/268 (5%)
Query: 185 SSDTEY-TDSE-EDTG-PRVKPVFVRASERMTVAERERKMXXXXXXXXXXXXXXXXXXXX 241
S ++EY TDSE E TG VKPVF+ S+R T+AERER
Sbjct: 160 SEESEYETDSEDEQTGMAMVKPVFIPKSQRDTIAERERLEEEERQLEELVKKRLEARKIE 219
Query: 242 XXXXXXXTIRSEQRGAQGEQKEGNINDVCTDDE-NDELEYEAWKLXXXXXXXXXXXXXXX 300
IR E+ + +E NI DV TDDE N+ EYE+WK
Sbjct: 220 TRQIVVEEIRKEEHIEKTLNEEANIEDVDTDDELNEAEEYESWKNREIARIKRDREERDA 279
Query: 301 XXXXXLTLERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDK----- 355
+E++RNMTE+ERR +R NPK + K K+KF+QKYYH+GAF+ +
Sbjct: 280 RLKEKEEIEKVRNMTEEERREWERKNPKPLREN--KQKWKFMQKYYHKGAFFQEGADDVI 337
Query: 356 ----EEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAW- 410
++D++ +DFS PT +D DK++LPKVMQVK FGRSGRTK+THLV++DTT++++ W
Sbjct: 338 QSAGKDDIYARDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNAPWA 397
Query: 411 SNETSAARLTNFRGGMKQVFEKPSAERK 438
+N A+ GM KP +K
Sbjct: 398 TNGPLRAKYNAKMAGMNAPIAKPKGSKK 425
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 69.7 bits (163), Expect = 4e-12
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 250 IRSEQRGAQGEQKEGNINDVCTDDENDELE-YEAWKLXXXXXXXXXXXXXXXXXXXXLTL 308
I E A E IN V TDDE D+ E YE+W+ +
Sbjct: 206 INEELLAANTASDEAAINGVDTDDEVDQAEEYESWRRREMARIKRIREESG--------I 257
Query: 309 ERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEED---------V 359
+ +++ EDE + R K+ +K + +F+Q+YYH+G F+ +D +
Sbjct: 258 DDDKSIMEDENPVADRPKKKM----KIKKQMRFMQRYYHKGCFFQQDADDAAQTAGSCEI 313
Query: 360 FKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTT 404
+++DFSGPT DK M VK FGR G K+THLV++DTT
Sbjct: 314 YRRDFSGPT---GLDK------MDVKHFGRRGGRKWTHLVNEDTT 349
>02_02_0526 + 11185825-11186832,11187795-11187869
Length = 360
Score = 52.4 bits (120), Expect = 7e-07
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 13/69 (18%)
Query: 327 PKVVTNKAVKGKYKFLQKYYHRGAFYLDKEE----------DVFKQDFSGPTLDDHFDKT 376
PK +T +K + +F+++YYH+G F+ D + +++++DFSGPT D D +
Sbjct: 273 PKKMT---IKKQMRFMRRYYHKGCFFQDDADGAAQTAAGACEIYRRDFSGPTGLDKMDVS 329
Query: 377 VLPKVMQVK 385
VLPKVMQV+
Sbjct: 330 VLPKVMQVE 338
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 30.3 bits (65), Expect = 3.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 369 LDDHFDKTVLPKVMQVKKFGRSGRTK 394
L +++ VLPKV++ K+ +SGRTK
Sbjct: 416 LHENYQLYVLPKVLESKRMAKSGRTK 441
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 74 QIITRKEEHHSDSEKEVDDPRLRRLRNIAQSPPRRAEHKP 113
Q+ EEH D + +VD P L A SPPR A H+P
Sbjct: 84 QVTPGGEEHCYDYDYDVDVPVGAELVMPACSPPRTAVHRP 123
>06_01_0487 -
3459853-3459917,3460058-3460408,3460991-3461114,
3461226-3461359,3462277-3462412,3462486-3462834,
3463994-3464000,3464058-3464226
Length = 444
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 312 RNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYH 347
R D RRL Q ++P++ N +V+G K Q YH
Sbjct: 348 RPYLSDRRRLYQLVDPRLGLNYSVRGVQKVAQICYH 383
>02_05_0021 -
25101738-25101881,25119662-25120331,25122562-25123779,
25123859-25124109
Length = 760
Score = 29.9 bits (64), Expect = 4.2
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 308 LERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEEDVFKQDFSGP 367
L++L+ M + +++ N + +TN+A+ + K ++ +RG ++LD +
Sbjct: 35 LQQLQRMLLRIQTVDEEANGRRITNQAMLLQLKTMRNVMYRGYYFLDNFRYRIALGHAPD 94
Query: 368 TLDDH 372
+DDH
Sbjct: 95 EVDDH 99
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 309 ERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEEDVFK-QDFSGP 367
ERLR + R + + + +++TN+ + + L+K +RG F L D+F+ + G
Sbjct: 65 ERLRWLLLRVRIIVEEADERIITNQVMLQQLNILRKEMYRGYFTL----DIFRCHGYKGD 120
Query: 368 TLDDH 372
DH
Sbjct: 121 NTKDH 125
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 78 RKEEHHSDSEKEVDDPRLRRLRNIAQSPPRRAEHKPEIIDAEPE 121
+KEEHH++ EK+ + L +L + S ++ + E+ID E
Sbjct: 61 KKEEHHAEGEKK--ESLLSKLHRSSSSSSSSSDEEEEVIDDNGE 102
>06_02_0217 + 13170731-13170826,13170886-13171203
Length = 137
Score = 29.1 bits (62), Expect = 7.4
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 203 PVFVRASERMTVAERERKMXXXXXXXXXXXXXXXXXXXXXXXXXXXTIRSEQR-GAQGEQ 261
P+F+ ++R+T+ ER+R R+E R +
Sbjct: 33 PIFIHKTQRVTITERKRIEDVARQLEEVLMKRIKKRKIETRQIVVEETRNELRINKIIKS 92
Query: 262 KEGNIN-DVCTDD-ENDELEYEAW 283
+E +I +V TDD EN EYEAW
Sbjct: 93 EESDIEIEVNTDDEENKAEEYEAW 116
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,872,066
Number of Sequences: 37544
Number of extensions: 341727
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 13
length of query: 441
length of database: 14,793,348
effective HSP length: 84
effective length of query: 357
effective length of database: 11,639,652
effective search space: 4155355764
effective search space used: 4155355764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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