GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001438-TA|BGIBMGA001438-PA|IPR009730|Micro-fibrillar-
associated 1, C-terminal
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17900.1 68418.m02099 expressed protein                            167   2e-41
At4g08580.1 68417.m01410 microfibrillar-associated protein-relat...   165   4e-41
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    30   3.5  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    29   4.7  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   4.7  
At2g36680.1 68415.m04499 expressed protein                             29   8.2  
At1g74950.1 68414.m08697 expressed protein                             29   8.2  

>At5g17900.1 68418.m02099 expressed protein
          Length = 435

 Score =  167 bits (405), Expect = 2e-41
 Identities = 102/267 (38%), Positives = 140/267 (52%), Gaps = 16/267 (5%)

Query: 187 DTEY-TDSEEDTG--PRVKPVFVRASERMTVAERERKMXXXXXXXXXXXXXXXXXXXXXX 243
           ++EY TDSE+D      +KPVFV  +ER T+AERER                        
Sbjct: 164 ESEYETDSEDDMPGIAMIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKLETK 223

Query: 244 XXXXXTIRSEQRGAQGEQ-KEGNINDVCTDDE-NDELEYEAWKLXXXXXXXXXXXXXXXX 301
                 +R ++   +    +E NI DV TDDE N+  EYE WK                 
Sbjct: 224 QIVVEEVRKDEEIRKNILLEEANIGDVETDDELNEAEEYEVWKTREIGRIKRERDAREAM 283

Query: 302 XXXXLTLERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEED--- 358
                 +E+LRNMTE ERR  +R NPK ++ +  K K+ F+QKYYH+GAF+    +D   
Sbjct: 284 LREREEIEKLRNMTEQERRDWERKNPKPLSAQPKK-KWNFMQKYYHKGAFFQADPDDEAG 342

Query: 359 ------VFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAW-S 411
                 +F++DFS PT +D  DK++LPKVMQVK FGRSGRTK+THLV++DTT++ + W S
Sbjct: 343 SAGTDGIFQRDFSAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWSNPWTS 402

Query: 412 NETSAARLTNFRGGMKQVFEKPSAERK 438
           N+    +      GM     KP   +K
Sbjct: 403 NDPLREKYNKKMAGMDAPIAKPKGSKK 429


>At4g08580.1 68417.m01410 microfibrillar-associated protein-related
           similar to Microfibrillar-associated protein 1
           (Associated microfibril protein) (AMF)
           (Swiss-Prot:P55080) [Gallus gallus]
          Length = 435

 Score =  165 bits (402), Expect = 4e-41
 Identities = 102/267 (38%), Positives = 139/267 (52%), Gaps = 16/267 (5%)

Query: 187 DTEY-TDSEEDTG--PRVKPVFVRASERMTVAERERKMXXXXXXXXXXXXXXXXXXXXXX 243
           ++EY TDSE+D      +KPVFV  +ER T+AERER                        
Sbjct: 164 ESEYETDSEDDMPGIALIKPVFVPKAERDTIAERERLEAEEEALEELAKRKLEQRKIETK 223

Query: 244 XXXXXTIRSEQRGAQGEQ-KEGNINDVCTDDE-NDELEYEAWKLXXXXXXXXXXXXXXXX 301
                 +R ++   +    +E NI DV TDDE N+  EYE WK                 
Sbjct: 224 QIVVEEVRKDEEIRKNILLEEANIGDVETDDELNEAEEYEVWKTREIGRIKRERDAREAM 283

Query: 302 XXXXLTLERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGAFYLDKEED--- 358
                 +E+LRNMTE ERR  +R NPK  ++   K K+ F+QKYYH+GAF+    +D   
Sbjct: 284 LREREEIEKLRNMTEQERRDWERKNPKP-SSAQPKKKWNFMQKYYHKGAFFQADPDDEAG 342

Query: 359 ------VFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAW-S 411
                 +F++DFS PT +D  DK++LPKVMQVK FGRSGRTK+THLV++DTT++ + W S
Sbjct: 343 SAGTDGIFQRDFSAPTGEDRLDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWSNPWTS 402

Query: 412 NETSAARLTNFRGGMKQVFEKPSAERK 438
           N+    +      GM     KP   +K
Sbjct: 403 NDPLREKYNKKMAGMDAPIAKPKGSKK 429


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 78  RKEEHHSDSEKEVDDPRLRRLRNIAQSPPRRAEHKP 113
           +++ HHSD E+  DD    R  ++A  PP   +H+P
Sbjct: 3   KRKIHHSDDEE--DDTFYYRYSSVAAPPPSNPKHQP 36


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 369 LDDHFDKTVLPKVMQVKKFGRSGRTK 394
           L + +   VLP+V++ KK  +SGRTK
Sbjct: 339 LHEDYQLYVLPRVLESKKMAKSGRTK 364


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 66  PERKQVLPQIITRKEEHHSDSEKEVDDPRLRRLRNIAQSPPRRAEHKPEIIDAEP 120
           P+++   P+   R  +    S + +D+  L+  R + ++ PR  EH+P  ++ +P
Sbjct: 331 PKQRSKTPEPSPRIPQTQPMSHRSLDNAALKMPRTV-ETRPRTPEHQPRTVETKP 384


>At2g36680.1 68415.m04499 expressed protein
          Length = 218

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 309 ERLRNMTEDERRLEQRINPKVVTNKAVKGKYKFLQKYYHRGA 350
           + +  + E+   L+Q+   K +   A   KYK L+  YHR A
Sbjct: 165 DAMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRA 206


>At1g74950.1 68414.m08697 expressed protein
          Length = 249

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 370 DDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAWSNETSAARLTNFRGGMKQV 429
           +D   KT+ P+         SG  +   ++ + T         E+ +A LT F GG   V
Sbjct: 75  EDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKP----ESQSAPLTIFYGGRVMV 130

Query: 430 FEKPSAERKHNV 441
           F+  SAE+   V
Sbjct: 131 FDDFSAEKAKEV 142


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,160,438
Number of Sequences: 28952
Number of extensions: 291752
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 12
length of query: 441
length of database: 12,070,560
effective HSP length: 83
effective length of query: 358
effective length of database: 9,667,544
effective search space: 3460980752
effective search space used: 3460980752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)