Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 211 8e-56
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 49 1e-06
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 28 1.5
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 7.9
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 26 7.9
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 7.9
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 211 bits (516), Expect = 8e-56
Identities = 104/170 (61%), Positives = 128/170 (75%), Gaps = 4/170 (2%)
Query: 133 DQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTK 192
D EN+ EH W+ SD DY Y ELL R F ++R NP + +G+K+K+ + PP V R G K
Sbjct: 152 DSENM-GEHA-WLKSDRDYYYPELLNRFFTLLRTNNPEL-AGEKRKYTIVPPSVHREG-K 207
Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYI 252
KT FAN ++I K +HR H++ FL AELGTSGSVDG+S+LIIKGRFQQKQIENVLRRYI
Sbjct: 208 KTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRFQQKQIENVLRRYI 267
Query: 253 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQAVTGKR 302
EYVTC TC+SPDTIL K+ R+FF+ CE CGS SV +IK+G+QA GKR
Sbjct: 268 VEYVTCKTCKSPDTILTKENRIFFMTCEACGSVRSVQAIKTGYQAQIGKR 317
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 48.8 bits (111), Expect = 1e-06
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGN-SQLIIKGRFQQKQIENVLRRY 251
KT N ++I K L R ++ F ELG ++ + + I+ G +++++L +
Sbjct: 34 KTVIPNMSDIAKALGRPPLYVTKFFGFELGAQTTIIADMDRYIVNGAHDAGKLQDLLDVF 93
Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCGSR 285
I+ +V C +C++P+T L K + C+ CG R
Sbjct: 94 IRRFVLCASCQNPETELSINKKDQTISYDCKACGYR 129
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 180 IMRPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRF 239
+M ++ G + F + K +Q + D+ + + G SG + Q
Sbjct: 25 LMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWCIEQHGKSGLTERCRQ----SNL 80
Query: 240 QQKQIENVLRRYIKEYV 256
K +EN L YIK+Y+
Sbjct: 81 TVKDVENQLLAYIKKYI 97
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 131 GEDQENVEDEHGEWVGSDHDYSYD-ELLERVFDIMREKNPSMVSGKK 176
G+ Q + +E + +GSD D S+ L ++ ++ + KN S+ S K
Sbjct: 45 GKTQTEINEELVDLIGSDFDTSFSLWLFNQIEELEKSKNASVESVSK 91
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 143 EWVGSDH-DYSYDEL-LERVFDIMREKNPSMVSGKK 176
+W DH D++ EL + ++F+ +RE+ P++ SG K
Sbjct: 545 DWNIMDHFDFAKPELKMFKIFNFIREQYPALKSGWK 580
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.8 bits (54), Expect = 7.9
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 142 GEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVV-RIGTKKTSFANFT 200
G+ + HD+S D LL D+ PS +S I + ++ ++ +F
Sbjct: 303 GDLLKKPHDFSADGLLSLQNDLT---TPSSLSTSLLMEITKAIALLTQLKVPAPTFKTSV 359
Query: 201 EI-CKTLHRQAKHLLDFLLAELGTSGSVD 228
I C Q K+L + LL LGT S D
Sbjct: 360 SISCSNFDSQIKYLENVLLNALGTIQSPD 388
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 181 MRPPQVVRIGTKKTSFA-NFTEICKTLH--RQAKHLLDFLLAELGTSGSVDGNSQLIIKG 237
++ P + IG+ + + + N T+I + L R + +LD LL + +SG D + +
Sbjct: 367 LKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLY 426
Query: 238 RFQQKQIENVLRR 250
+ + ++E L R
Sbjct: 427 KKEAARVEGTLAR 439
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,027
Number of Sequences: 5004
Number of extensions: 42276
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 7
length of query: 310
length of database: 2,362,478
effective HSP length: 73
effective length of query: 237
effective length of database: 1,997,186
effective search space: 473333082
effective search space used: 473333082
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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