Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077... 152 4e-37
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 114 7e-26
09_02_0462 + 9583558-9584910 60 3e-09
08_01_0838 - 8185083-8185910 31 1.6
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 3.6
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.6
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 29 4.8
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 28 8.3
>07_03_1699 -
28807154-28807218,28807324-28807466,28807570-28807715,
28808142-28808242,28808314-28808365,28808483-28808538,
28808616-28808721,28809314-28809358
Length = 237
Score = 152 bits (368), Expect = 4e-37
Identities = 72/131 (54%), Positives = 96/131 (73%), Gaps = 12/131 (9%)
Query: 133 DQENVEDEHGE-----------WVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 181
D + VE+E GE W G+D DY+YDELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQVVEEEEGEGIVLGGAPRYPWEGTDRDYNYDELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 182 RPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQ 241
RPPQV+R GTKKT F NF ++CKT+HRQ +H++ FLLAE+GTSGS+DG +L+IKGRF
Sbjct: 146 RPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAP 205
Query: 242 KQIENVLRRYI 252
K E +LRRYI
Sbjct: 206 KNFEAILRRYI 216
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 114 bits (275), Expect = 7e-26
Identities = 52/93 (55%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
Query: 191 TKKTSFANFTEIC---KTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENV 247
++K ++ TEI +HRQ +H++ FLLAE+GTSGS+DG +L+IKGRF K E +
Sbjct: 188 SEKINYHELTEIIVYTSRMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAI 247
Query: 248 LRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCE 280
LRRYI EYV C+ C+SPDTIL K+ RLFFL+CE
Sbjct: 248 LRRYINEYVICNGCKSPDTILSKENRLFFLRCE 280
Score = 86.2 bits (204), Expect = 3e-17
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 127 EDVRGEDQENVEDEHG-----EWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 181
+D GED+E G W G+D DY Y+ELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQIGEDEEGEGIVLGGATRYPWEGTDRDYKYEELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 182 RPPQVVRIGTKKTSFANFTEICKT 205
RPPQV+R GTKKT F NF ++CKT
Sbjct: 146 RPPQVLREGTKKTVFVNFMDLCKT 169
>09_02_0462 + 9583558-9584910
Length = 450
Score = 59.7 bits (138), Expect = 3e-09
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQL-IIKGRFQQKQIENVLRRY 251
KT+ N +I K L R A + + ELG D + + ++ G ++ +L +
Sbjct: 35 KTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGAHDTAKLAGLLENF 94
Query: 252 IKEYVTCHTCRSPDT-ILQKDTRLFFLQCETCG 283
IK+YV C+ C +P+T +L T++ L+C CG
Sbjct: 95 IKKYVQCYGCGNPETEVLISKTQMITLKCAACG 127
>08_01_0838 - 8185083-8185910
Length = 275
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 22 DLEAALAGEQGESTSMETPADTGDVDAPEDDNLD 55
D A AGE+G S+S + GD + EDD+ D
Sbjct: 84 DSSGASAGERGRSSSHRSDVKLGDAEEEEDDDED 117
>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 122 ELVTEEDVRGEDQENVEDEHGEWVGSDHDYSYDEL-----LERVFDI-MREKNPSMVSGK 175
E +TE+ V E +V +HGE GS Y + LE+ D+ ++ + P +V G
Sbjct: 1001 EQLTEKSVIQEPGSHVSPDHGEDGGSHEVDKYAHISDSFCLEKSIDLPVKNELPELVRGN 1060
Query: 176 KQKFIMRPPQVVRIGTKKTSFAN 198
+ + +P + + F+N
Sbjct: 1061 EMYPVAKPSKCFHVFLNLLDFSN 1083
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 25 AALAGEQGESTSMETPADTGDVDAPEDD 52
A LAG QGES +M P GD D +D+
Sbjct: 8 ARLAGSQGESPAMLHPNGDGDGDGGDDE 35
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 155 ELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLH-RQAKHL 213
E+LE E+ + S +KQ F++R P+V+ I K+ N +I + + ++ L
Sbjct: 194 EILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNIEFKETLFL 253
Query: 214 LDFL 217
DF+
Sbjct: 254 SDFM 257
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 122 ELVTEEDVRGEDQ--ENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKK 176
EL E + +G D+ E VE +W G + D +E+ ERV E+N + V +K
Sbjct: 364 ELKFEVEKKGVDENGEEVEFNLEDWDGDEEDDVLEEVYERVEREEMEENEAGVQQEK 420
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,404,339
Number of Sequences: 37544
Number of extensions: 267758
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 9
length of query: 310
length of database: 14,793,348
effective HSP length: 82
effective length of query: 228
effective length of database: 11,714,740
effective search space: 2670960720
effective search space used: 2670960720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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