Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42)              32   0.69 
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              31   0.91 
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       29   6.4  

>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVD-GNSQLIIKGRFQQKQIENVLRRY 251
           KT   N  +I K L R   +   +   ELG    +D  N + I+ G  Q  +++ +L  +
Sbjct: 34  KTVIVNMPDIAKALSRPPSYPTKYFGCELGAQTQIDLKNERYIVNGAHQADKLQEILDGF 93

Query: 252 IKEYVTCHTCRSPDTILQKDTRLFFL--QCETCG 283
           I+ +V C +C +P+T+L  DTR   +   C+ CG
Sbjct: 94  IERFVLCSSCENPETVLVVDTRKERIGQNCKACG 127


>SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42)
          Length = 315

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 196 FANFTEICKTLHRQAKHLLDFLLAELGTSGSVD-GNSQLIIKGRFQQKQIENVLRRYIKE 254
           +  ++++   LHR   H++D+L  +L     +   +  L+ KG+   ++ E +    +KE
Sbjct: 144 YHGYSDVIGFLHRVDGHVIDYLSIKLANGKHLRVSDKHLVFKGKMDSRRFEEIFASQVKE 203


>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 126 EEDVRGEDQENVEDEHGEWVGSDHDYSYDE 155
           E++  GED+EN EDE  E  G D D   +E
Sbjct: 401 EDEENGEDEENGEDEENEENGEDDDDEEEE 430


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 22  DLEAALAGEQGESTSMETPADTGDVDAPEDDNLDLDNF 59
           DLE A A  Q  +TS+E P D  ++D  E DNL   +F
Sbjct: 69  DLETAFA-PQFNNTSLEIPEDRPNIDVDEFDNLSRASF 105


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 9   PSLXXXXXXXTGFDLEAALAGEQGESTSMETPADTGDVDAPE 50
           P +        G DL AA    QG    + TP D  DVD+P+
Sbjct: 498 PKIIRVASGTEGDDLPAAEQSTQGNVAMVTTPTDDVDVDSPQ 539


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 195 SFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQK 242
           S  +F  + K LH QA HL + +L   G  G   G+S+  ++G  +++
Sbjct: 649 SAEDFFRLLKNLH-QANHLNNTILITFGDHGFRYGSSRTTLQGHLEER 695


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,428
Number of Sequences: 59808
Number of extensions: 311714
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 9
length of query: 310
length of database: 16,821,457
effective HSP length: 82
effective length of query: 228
effective length of database: 11,917,201
effective search space: 2717121828
effective search space used: 2717121828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)