Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
         (310 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    30   0.030
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.84 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 0.030
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 157 LERVFDIMREKNPSMVSGKKQKFIMRPP 184
           L+++FDI  ++N  ++SG+ QK    PP
Sbjct: 358 LDKIFDIATKENAMLLSGRSQKSTTGPP 385


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 197 ANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG 229
           A++ +    + +Q +  +D+L+A  GT G++ G
Sbjct: 190 AHYDQTAIEIWKQCEGKIDYLVAGAGTGGTISG 222


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 129 VRGEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMRE--KNPSMVSGKKQKFIMRPPQV 186
           ++ + ++N E++  + V  + + +YDE       I+R   K+P    G +     R   +
Sbjct: 155 MKSKKEQNAEEDIVDPV--EENETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDRRKGSI 212

Query: 187 VRIGTKKTSFANFTEICKTLHRQAKHLL 214
            R  +  ++ A+  +I  T H+Q +H L
Sbjct: 213 ARCWSLDSTAASDEDISLTTHQQKRHKL 240


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,635
Number of Sequences: 429
Number of extensions: 2462
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 140,377
effective HSP length: 58
effective length of query: 252
effective length of database: 115,495
effective search space: 29104740
effective search space used: 29104740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)