GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
         (310 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    28   0.10 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   1.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.9  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 247 VLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQ--CETCG 283
           +L  +I+++V C  C +P+T L   T+   +   C+ CG
Sbjct: 2   LLDGFIRKFVLCPECENPETELLVSTKRSTISQGCKACG 40


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 191 TKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRR 250
           TK++ F  + E+C+ L   A ++ D    E+    +V+G+  +   G   +K I N + +
Sbjct: 362 TKESGFLAYYEVCELLQNGATYIWD---DEMKVPYAVNGDQWI---GFDDEKSIRNKM-K 414

Query: 251 YIKE 254
           +IK+
Sbjct: 415 WIKD 418


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 127 EDVRGEDQENVEDEHGEWVGSDHDYSYDELLER-VFDIMRE 166
           ED   ++Q++ +D  G    +D D   +E  +R ++  MR+
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRK 216


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 127 EDVRGEDQENVEDEHGEWVGSDHDYSYDELLER-VFDIMRE 166
           ED   ++Q++ +D  G    +D D   +E  +R ++  MR+
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRK 216


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 127 EDVRGEDQENVEDEHGEWVGSDHDYSYDELLER-VFDIMRE 166
           ED   ++Q++ +D  G    +D D   +E  +R ++  MR+
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRK 216


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,095
Number of Sequences: 317
Number of extensions: 2027
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 310
length of database: 114,650
effective HSP length: 57
effective length of query: 253
effective length of database: 96,581
effective search space: 24434993
effective search space used: 24434993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)