GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
         (310 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    27   0.67 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   2.1  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    25   2.1  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      25   3.6  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.7  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 243 QIENVLRRYIKEYVTCHTCRSP 264
           Q E++LR   ++ +TCH CR P
Sbjct: 189 QSESILRVGPEKKITCHRCRKP 210


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 126 EEDVRG-EDQENVEDEH-GEWVGSDHDYSYDEL 156
           EED  G ED+E+ EDE+ G+    D +   DEL
Sbjct: 475 EEDYEGEEDEEDEEDEYEGDDTEEDEEDEDDEL 507


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 258 CHTCRSPDTILQKDTRLFFLQCETCGSRCS 287
           C TCR   T   + T  +  +C TC  RC+
Sbjct: 653 CGTCRCTVTEDGRYTGRYCEKCPTCAGRCN 682


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/36 (30%), Positives = 25/36 (69%)

Query: 191 TKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGS 226
           T+++S+   TEI +T+  + +++L F+ A++  +GS
Sbjct: 291 TEESSWFRETEIYQTVLMRNENILGFIAADIKGTGS 326


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)

Query: 153 YDELLERVFDIMREKNPSMVSG 174
           ++E+L+R+ D + + NP ++SG
Sbjct: 98  FEEMLKRISDEVYDVNPIIISG 119


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,512
Number of Sequences: 2123
Number of extensions: 8835
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 310
length of database: 516,269
effective HSP length: 64
effective length of query: 246
effective length of database: 380,397
effective search space: 93577662
effective search space used: 93577662
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)