GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
         (310 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L19197-1|AAA28504.1|  312|Drosophila melanogaster eIF-2 beta-sub...   332   4e-91
AE014296-2158|AAF49902.1|  312|Drosophila melanogaster CG4153-PA...   332   4e-91
AY071253-1|AAL48875.1|  312|Drosophila melanogaster RE29270p pro...   332   5e-91
AY060843-1|AAL28391.1|  464|Drosophila melanogaster GM02147p pro...    46   9e-05
AE014298-2312|AAS65382.1|  464|Drosophila melanogaster CG9177-PG...    46   9e-05
AE014298-2311|AAS65381.1|  464|Drosophila melanogaster CG9177-PF...    46   9e-05
AE014298-2310|AAS65380.1|  464|Drosophila melanogaster CG9177-PE...    46   9e-05
AE014298-2309|AAS65379.1|  464|Drosophila melanogaster CG9177-PD...    46   9e-05
AE014298-2308|AAS65378.1|  464|Drosophila melanogaster CG9177-PC...    46   9e-05
AE014298-2307|AAF48554.1|  464|Drosophila melanogaster CG9177-PB...    46   9e-05
AE014298-2306|AAF48553.1|  464|Drosophila melanogaster CG9177-PA...    46   9e-05

>L19197-1|AAA28504.1|  312|Drosophila melanogaster eIF-2
           beta-subunit protein.
          Length = 312

 Score =  332 bits (816), Expect = 4e-91
 Identities = 176/314 (56%), Positives = 203/314 (64%), Gaps = 8/314 (2%)

Query: 1   MDDDMIFDPSLXXXXXXX-TGFDLEAALAGEQGESTSMETPADTGDVD---APEDDNLDL 56
           MD +  FDP+L        T FDL+AAL  E  + T  E P D    +   A E+DNLDL
Sbjct: 1   MDAEDGFDPTLLKKKKKKKTTFDLDAALGLE--DDTKKEDPQDEASAEGGAAAEEDNLDL 58

Query: 57  DNFGXXXXXXXXTFFNLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 116
           ++FG         F N+                                           
Sbjct: 59  ESFGKKKKKKKKPF-NMDEIEAAIPSFGGDDVAASEEPEEEEINLDMDFSMAKKKKKSKK 117

Query: 117 XXXXXELVTE-EDVRGEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGK 175
                    + +D + ED+EN ED    W GSD DY+YDELL+RVF+I+ +KNP M +G+
Sbjct: 118 KELDELFADQADDDKSEDKENDEDNSSTWFGSDRDYTYDELLKRVFEIILDKNPDMAAGR 177

Query: 176 KQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLII 235
           K KF+MRPPQV+R+GTKKTSFANF +I KTLHR  KHLLDFLLAELGTSGS+DGN QLII
Sbjct: 178 KPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLII 237

Query: 236 KGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGF 295
           KGRFQ KQIENVLRRYIKEYVTCHTCRSP+TILQKDTRLFFLQCE+CGSRCSVASIKSGF
Sbjct: 238 KGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGF 297

Query: 296 QAVTGKRAAIRAKT 309
           QAVTGKRAAIRAKT
Sbjct: 298 QAVTGKRAAIRAKT 311


>AE014296-2158|AAF49902.1|  312|Drosophila melanogaster CG4153-PA
           protein.
          Length = 312

 Score =  332 bits (816), Expect = 4e-91
 Identities = 176/314 (56%), Positives = 203/314 (64%), Gaps = 8/314 (2%)

Query: 1   MDDDMIFDPSLXXXXXXX-TGFDLEAALAGEQGESTSMETPADTGDVD---APEDDNLDL 56
           MD +  FDP+L        T FDL+AAL  E  + T  E P D    +   A E+DNLDL
Sbjct: 1   MDAEDGFDPTLLKKKKKKKTTFDLDAALGLE--DDTKKEDPQDEASAEGGAAAEEDNLDL 58

Query: 57  DNFGXXXXXXXXTFFNLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 116
           ++FG         F N+                                           
Sbjct: 59  ESFGKKKKKKKKPF-NMDEIEAAIPSFGGDDVAASEEPEEEEINLDMDFSMAKKKKKSKK 117

Query: 117 XXXXXELVTE-EDVRGEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGK 175
                    + +D + ED+EN ED    W GSD DY+YDELL+RVF+I+ +KNP M +G+
Sbjct: 118 KELDELFADQADDDKSEDKENDEDNSSTWFGSDRDYTYDELLKRVFEIILDKNPDMAAGR 177

Query: 176 KQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLII 235
           K KF+MRPPQV+R+GTKKTSFANF +I KTLHR  KHLLDFLLAELGTSGS+DGN QLII
Sbjct: 178 KPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLII 237

Query: 236 KGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGF 295
           KGRFQ KQIENVLRRYIKEYVTCHTCRSP+TILQKDTRLFFLQCE+CGSRCSVASIKSGF
Sbjct: 238 KGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGF 297

Query: 296 QAVTGKRAAIRAKT 309
           QAVTGKRAAIRAKT
Sbjct: 298 QAVTGKRAAIRAKT 311


>AY071253-1|AAL48875.1|  312|Drosophila melanogaster RE29270p
           protein.
          Length = 312

 Score =  332 bits (815), Expect = 5e-91
 Identities = 176/314 (56%), Positives = 202/314 (64%), Gaps = 8/314 (2%)

Query: 1   MDDDMIFDPSLXXXXXXX-TGFDLEAALAGEQGESTSMETPADTGDVD---APEDDNLDL 56
           MD +  FDP+L        T FDL+AAL  E  + T  E P D    +   A E+DNLDL
Sbjct: 1   MDAEDGFDPTLLKKKKKKKTTFDLDAALGLE--DDTKKEDPQDEASAEGGAAAEEDNLDL 58

Query: 57  DNFGXXXXXXXXTFFNLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 116
           + FG         F N+                                           
Sbjct: 59  EGFGKEKKKKKKPF-NMDEIEAAIPSFGGDDVAASEEPEEEEINLDMDFSMAKKKKKSKK 117

Query: 117 XXXXXELVTE-EDVRGEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGK 175
                    + +D + ED+EN ED    W GSD DY+YDELL+RVF+I+ +KNP M +G+
Sbjct: 118 KELDELFADQADDDKSEDKENDEDNSSTWFGSDRDYTYDELLKRVFEIILDKNPDMAAGR 177

Query: 176 KQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLII 235
           K KF+MRPPQV+R+GTKKTSFANF +I KTLHR  KHLLDFLLAELGTSGS+DGN QLII
Sbjct: 178 KPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLII 237

Query: 236 KGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGF 295
           KGRFQ KQIENVLRRYIKEYVTCHTCRSP+TILQKDTRLFFLQCE+CGSRCSVASIKSGF
Sbjct: 238 KGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGF 297

Query: 296 QAVTGKRAAIRAKT 309
           QAVTGKRAAIRAKT
Sbjct: 298 QAVTGKRAAIRAKT 311


>AY060843-1|AAL28391.1|  464|Drosophila melanogaster GM02147p
           protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2312|AAS65382.1|  464|Drosophila melanogaster CG9177-PG,
           isoform G protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2311|AAS65381.1|  464|Drosophila melanogaster CG9177-PF,
           isoform F protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2310|AAS65380.1|  464|Drosophila melanogaster CG9177-PE,
           isoform E protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2309|AAS65379.1|  464|Drosophila melanogaster CG9177-PD,
           isoform D protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2308|AAS65378.1|  464|Drosophila melanogaster CG9177-PC,
           isoform C protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2307|AAF48554.1|  464|Drosophila melanogaster CG9177-PB,
           isoform B protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


>AE014298-2306|AAF48553.1|  464|Drosophila melanogaster CG9177-PA,
           isoform A protein.
          Length = 464

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT   N  E+ + + R A +   +   ELG     D  N + ++ G     +++++L  +
Sbjct: 34  KTVLVNMAEVARAIGRPATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGF 93

Query: 252 IKEYVTCHTCRSPDTIL--QKDTRLFFLQCETCG 283
           I+++V C  C +P+T L      +     C+ CG
Sbjct: 94  IRKFVLCPECDNPETNLTVSAKNQTISQSCKACG 127


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,297
Number of Sequences: 52641
Number of extensions: 470338
Number of successful extensions: 1598
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 14
length of query: 310
length of database: 24,830,863
effective HSP length: 85
effective length of query: 225
effective length of database: 20,356,378
effective search space: 4580185050
effective search space used: 4580185050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)