GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001437-TA|BGIBMGA001437-PA|IPR002735|Translation
initiation factor IF2/IF5
         (310 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical p...   231   5e-61
Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical p...   231   5e-61
U64857-14|AAL16313.1|  402|Caenorhabditis elegans Hypothetical p...    56   3e-08
U64857-13|AAC25859.2|  436|Caenorhabditis elegans Hypothetical p...    56   3e-08
U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical p...    56   3e-08
Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    29   3.2  
Z50070-5|CAA90401.2|  270|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF106583-12|AAD03133.1|  432|Caenorhabditis elegans Hypothetical...    29   4.2  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    28   7.4  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    28   7.4  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    28   9.7  
AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score =  231 bits (565), Expect = 5e-61
 Identities = 107/176 (60%), Positives = 138/176 (78%), Gaps = 5/176 (2%)

Query: 131 GEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIG 190
           G   +N+ D  G W     DY+Y+E L  V+ +M++KNP   +G K+KF ++ P+V R G
Sbjct: 71  GIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDKNPDF-AGDKKKFAIKLPEVARAG 125

Query: 191 TKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRR 250
           +KKT+F+NF EIC+ + RQ KH+L FLLAELGT+GS+DG++ LI+KGR+QQKQ E+VLR+
Sbjct: 126 SKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRWQQKQFESVLRK 185

Query: 251 YIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQAVTGKRAAIR 306
           YIKEYV CHTC+SP+T L KDTRLFFLQC  CGSRCSV +IKSGF+AV GKRAAIR
Sbjct: 186 YIKEYVMCHTCKSPETQLTKDTRLFFLQCTNCGSRCSVTAIKSGFKAVVGKRAAIR 241


>Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score =  231 bits (565), Expect = 5e-61
 Identities = 107/176 (60%), Positives = 138/176 (78%), Gaps = 5/176 (2%)

Query: 131 GEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIG 190
           G   +N+ D  G W     DY+Y+E L  V+ +M++KNP   +G K+KF ++ P+V R G
Sbjct: 71  GIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDKNPDF-AGDKKKFAIKLPEVARAG 125

Query: 191 TKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRR 250
           +KKT+F+NF EIC+ + RQ KH+L FLLAELGT+GS+DG++ LI+KGR+QQKQ E+VLR+
Sbjct: 126 SKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRWQQKQFESVLRK 185

Query: 251 YIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQAVTGKRAAIR 306
           YIKEYV CHTC+SP+T L KDTRLFFLQC  CGSRCSV +IKSGF+AV GKRAAIR
Sbjct: 186 YIKEYVMCHTCKSPETQLTKDTRLFFLQCTNCGSRCSVTAIKSGFKAVVGKRAAIR 241


>U64857-14|AAL16313.1|  402|Caenorhabditis elegans Hypothetical
           protein C37C3.2b protein.
          Length = 402

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT  +N +EI K L R   +   +   ELG   + D  N + I+ G     +++++L  +
Sbjct: 33  KTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDGF 92

Query: 252 IKEYVTCHTCRSPDTILQKDTRLFFLQCETCG 283
           IK++V C +C +P+T L         +C+ CG
Sbjct: 93  IKKFVLCKSCENPETQLFVRKNNIKSKCKACG 124


>U64857-13|AAC25859.2|  436|Caenorhabditis elegans Hypothetical
           protein C37C3.2a protein.
          Length = 436

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT  +N +EI K L R   +   +   ELG   + D  N + I+ G     +++++L  +
Sbjct: 33  KTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDGF 92

Query: 252 IKEYVTCHTCRSPDTILQKDTRLFFLQCETCG 283
           IK++V C +C +P+T L         +C+ CG
Sbjct: 93  IKKFVLCKSCENPETQLFVRKNNIKSKCKACG 124


>U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical
           protein C37C3.2c protein.
          Length = 413

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 193 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRY 251
           KT  +N +EI K L R   +   +   ELG   + D  N + I+ G     +++++L  +
Sbjct: 33  KTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDGF 92

Query: 252 IKEYVTCHTCRSPDTILQKDTRLFFLQCETCG 283
           IK++V C +C +P+T L         +C+ CG
Sbjct: 93  IKKFVLCKSCENPETQLFVRKNNIKSKCKACG 124


>Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical
           protein F54G8.2 protein.
          Length = 812

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 154 DELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQAKHL 213
           D  +   F +MREK P   + + +  +        +GT +T     +  CK LH Q   L
Sbjct: 588 DASIAHRFHVMREKFPEKFNSRMRNKLW----YFELGTSET----LSSSCKNLHEQIDIL 639

Query: 214 LDFLLAELGTSGSVDGNSQLII 235
            D    +LG   S++G + L I
Sbjct: 640 CDGESIDLGQDASLEGIALLNI 661


>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 138 EDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTS 195
           EDEHG   G+ H    DE+LE   +     + S+V    +   +   ++ R  TK+T+
Sbjct: 36  EDEHGNQGGAHHATDEDEVLELELEGREALDQSLVPVLARNIWLEEGEIRRYLTKETA 93


>Z50070-5|CAA90401.2|  270|Caenorhabditis elegans Hypothetical
           protein F43G6.4 protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 263 SPDTILQKDTRLFFLQCETCGSRCSVASIKSGF 295
           SPD  ++KD   F+++C TC   CS A + S F
Sbjct: 187 SPD--MKKDDE-FYMKCTTCHQPCSYAIVMSAF 216


>AF106583-12|AAD03133.1|  432|Caenorhabditis elegans Hypothetical
           protein F23C8.11 protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 122 ELVTEEDVRGEDQENVEDEH--GEWVGSDH-DYSYDE 155
           E++ EED    D E V +E+   E    +H DYSYDE
Sbjct: 52  EVIDEEDESDGDDEEVHEEYVQQELADENHFDYSYDE 88


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 243 QIENVLRRYIKEYVTCHTC--RSPDTILQKDTRLFFLQCETC 282
           Q+     R +KE +TC +C  R  D I+ K   LF   CETC
Sbjct: 767 QVLEEANRQMKETLTCPSCKTRPKDCIMLKCYHLF---CETC 805


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 243 QIENVLRRYIKEYVTCHTC--RSPDTILQKDTRLFFLQCETC 282
           Q+     R +KE +TC +C  R  D I+ K   LF   CETC
Sbjct: 770 QVLEEANRQMKETLTCPSCKTRPKDCIMLKCYHLF---CETC 808


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 123 LVTEEDVRGEDQENVE-DEHGEWVGSDHDYSYDELLER 159
           LV++E   G+ +E  E DE G+     +DY Y++  ER
Sbjct: 96  LVSDESTTGDHEEEEEDDEDGDDESDHNDYDYEDDGER 133


>AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical
           protein T05H4.9 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 132 EDQENVEDEHGEWVGSDHDYSYDELLERVFDIM 164
           ED + V+D H +W+  + + S D +L    D+M
Sbjct: 53  EDDDAVDDNHEDWIPEEFEPSDDVVLASHRDVM 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,386,599
Number of Sequences: 27539
Number of extensions: 240638
Number of successful extensions: 812
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 13
length of query: 310
length of database: 12,573,161
effective HSP length: 81
effective length of query: 229
effective length of database: 10,342,502
effective search space: 2368432958
effective search space used: 2368432958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)