GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001436-TA|BGIBMGA001436-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (410 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    52   1e-08
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   4.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 51.6 bits (118), Expect = 1e-08
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 149 TLQSLYLSGLKLCNFRRDIL-LLKHLAVLDLSNNEIEKLPPE-FGRMANLSELHLANNQL 206
           +L  LYL   KL N  +D+   + HL VLDLS+N + +L  + F     L  L  ++N++
Sbjct: 249 SLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRI 308

Query: 207 GVRGVVDWRWLLGPQITKTLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPAT- 265
                  +R+L        L+++D + N+L  LP  +++   L  L  + N++ +LP T 
Sbjct: 309 SEIPNDLFRFL------GNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGKLPLTS 362

Query: 266 --IGRISTLRYFTISSNELQSLPCSLMQCR---LEYIDISSNK 303
             +    TL    +S N + SL       R   L ++D+S N+
Sbjct: 363 LSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNR 405



 Score = 36.3 bits (80), Expect = 4e-04
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 8/180 (4%)

Query: 149 TLQSLYLSGLKLCNFRRD-ILLLKHLAVLDLSNNEIEKLPP-EFGRMANLSELHLANNQL 206
           TL+  +     + NF  D I +L  L  LDLSNN +  +P   F  + +L ++HL +N +
Sbjct: 19  TLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTI 78

Query: 207 GVRGVVDWRWLLGPQITKTLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLP-AT 265
            +     ++  +   +T+     +   N   H    + +LE+   +  +DN I  L    
Sbjct: 79  EMIHRGTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQ---IHLDDNRIESLERRA 135

Query: 266 IGRISTLRYFTISSNELQSLPCSLMQ--CRLEYIDISSNKFDNKQNNSTSDQYSPWQFYV 323
              + +L+   +  N++ ++     Q    LE +D++ N   +   N      S   F+V
Sbjct: 136 FMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHV 195



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 148 RTLQSLYLSGLKLCNFRR--DILLLKHLAVLDLSNNEIEKLPP-EFGRMANLSELHLANN 204
           +TL  L LS   + +      +   K L+ LDLS N + ++    F  +  L+ L+L +N
Sbjct: 369 QTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKGIPRLASLNLGHN 428

Query: 205 QLGVRGVVDWRWLLGPQITKTLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPA 264
               +  ++   L    +  TL  L+L +  L  +P        L++L    N +  +  
Sbjct: 429 S---QLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPAL--STPNLLSLSLAFNSLPTVAL 483

Query: 265 TI-GRISTLRYFTISSNELQSLP-CSLMQCRLEYIDISSNKFDNKQNNS 311
            + G IS+LRY  +  N+L ++P  +     L ++ +  N      N S
Sbjct: 484 EVAGNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTS 532



 Score = 33.5 bits (73), Expect = 0.003
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 148 RTLQSLYLSGLKLCNFRRDIL-LLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQL 206
           + LQ L  S  ++     D+   L +L ++D S+N +  LP    R   L  L +++N L
Sbjct: 296 KKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLL 355

Query: 207 GVRGVVDWRWLLGPQITKTLKLLDLTSNKLGHL 239
           G   +      L     +TL  LDL+ N +  L
Sbjct: 356 GKLPLTS----LSLASAQTLSELDLSWNSISSL 384


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
          peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 29 TLALGKEPKSETEYFILHFS 48
          TL  G+  KS   YFI H +
Sbjct: 48 TLLFGRSRKSRMNYFITHLA 67


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
          protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 2  KIQCQIEVINRLHSALNLRNNGKYLKSTLAL 32
          KI+ +++V   L    N++NN +Y  ++L L
Sbjct: 44 KIEGKVQVPEALKKIYNIQNNFEYDTASLPL 74


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,061
Number of Sequences: 317
Number of extensions: 4372
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 410
length of database: 114,650
effective HSP length: 58
effective length of query: 352
effective length of database: 96,264
effective search space: 33884928
effective search space used: 33884928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)