Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001436-TA|BGIBMGA001436-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 52 1e-07
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 45 2e-05
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 40 6e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 39 0.001
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 36 0.008
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 31 0.22
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 28 2.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 3.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.6
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 27 4.8
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 27 6.4
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 6.4
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 27 6.4
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 27 6.4
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 26 8.4
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 8.4
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 26 8.4
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 52.0 bits (119), Expect = 1e-07
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 218 LGPQITK--TLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYF 275
+GP+I K L+ L++ SN L P+++ +LE L L + N I +LP + G + L+
Sbjct: 67 IGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVL 126
Query: 276 TISSNELQSLPCSLMQC-RLEYIDISSN 302
+IS N L LP + LE + I +N
Sbjct: 127 SISKNRLFELPTYIAHMPNLEILKIENN 154
Score = 44.8 bits (101), Expect = 2e-05
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 118 LSSLSVTAKNNAPVKLVISDRSQF-PAKGLPRTLQSLYLSGLKLCNFRRDILLLKHLAVL 176
+S+ V++ N+ ++ +I + P L L L L L R + +A L
Sbjct: 1 MSAHEVSSTKNSEIERIIKEAEDAGPENALTLDLSHLNLRELPYEQLER---IQGRIARL 57
Query: 177 DLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGVVDWRWLLGPQITKTLKLLDLTSNKL 236
L +N I+ + PE + L L++ +N L R + L ++L++LD++ NK+
Sbjct: 58 ALGHNFIKSIGPEILKFTRLRYLNIRSNVL--REFPESLCRL-----ESLEILDISRNKI 110
Query: 237 GHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNEL 282
LP++ L L L + N + LP I + L I +N +
Sbjct: 111 KQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHI 156
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 44.8 bits (101), Expect = 2e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 113 LHLSPLSSLSVTAKNNAPVKLVISDRSQFPAKGLPRTLQSLYLSGLKLCNFRRDILLLKH 172
L+ S ++L+ T+K V +S+ +K R L L G+ L N D+
Sbjct: 123 LNTSSGTTLNSTSKTTTSSVAVDDQKSKSDSKKERRDWTCLDLGGIGLRNVSTDLFKFSF 182
Query: 173 LAVLDLSNNEIEKLPPEFGRMANLSELHLANNQL 206
L L +++N + +LPPE G++ NL L + N +
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNSI 216
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 150 LQSLYLSGLKLCNFRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGV 208
L LY++ L +I LK+L +LD S N I+ +PPE G + L E+ L +N + V
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISV 241
Score = 42.3 bits (95), Expect = 1e-04
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 176 LDLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGVVDWRWLLGPQI--TKTLKLLDLTS 233
LDL + + + + + L+EL++ +N L L P+I K L +LD +
Sbjct: 163 LDLGGIGLRNVSTDLFKFSFLTELYINHNNLT---------RLPPEIGKLKNLVILDASG 213
Query: 234 NKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQSL 285
N + +P + L +L + DNMIS +PA +G + L+ I N LQ +
Sbjct: 214 NSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNPLQDV 265
Score = 35.5 bits (78), Expect = 0.014
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 229 LDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQSLPCS 288
LDL L ++ ++K L L N N ++RLP IG++ L S N ++++P
Sbjct: 163 LDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPE 222
Query: 289 L 289
L
Sbjct: 223 L 223
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 39.9 bits (89), Expect = 6e-04
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 173 LAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGVVDWRWLLGPQITKTLKLLDLT 232
L L+++NN++ LP + NL+ L L+ N ++ + + LL
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQI 563
Query: 233 SNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQSLPCSLMQC 292
S+K+G L K K + L+ ND + +RLP IG + L +S N + ++ SL +C
Sbjct: 564 SSKIGSLVKL-----KHLYLQFND-LSNRLPQEIGLLKNLETIDLSYNAITNI-ASLSEC 616
Query: 293 -RLEYIDISSNKFDNKQNNSTSDQYSPWQF 321
+L I+++ N + ++ S + + F
Sbjct: 617 PKLNSINVACNLLSFYEYSNPSATFIDFSF 646
Score = 39.1 bits (87), Expect = 0.001
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 226 LKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQSL 285
LK L ++ N+L +L + L TL AN N +S P +LR+ IS+N LQ+L
Sbjct: 856 LKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNL 915
Query: 286 PC------SLMQC-RLEYIDISSNKF----DNKQNNSTSDQYSPWQFYVGSLVHLSAKI- 333
SL + +LEY+++S N + +++ N T +F S++ L+ K
Sbjct: 916 AVEKAEKKSLTKLPQLEYLNLSGNTWFRFSEHEDTNFTKSYLKNLKFL--SIMDLNTKFS 973
Query: 334 -----ILKHKIHYAS---NIIPWTLVEFLDNA--NMCVCGAPVVNYTHSINKEYDLKD 381
+L H I S NI+ + + +L + + C V N+ H + Y + D
Sbjct: 974 NAPSDVLNHFIQRNSPQPNILRYGVCGYLSRSIPVISACELVVNNFLHPQSSLYCVLD 1031
Score = 38.7 bits (86), Expect = 0.001
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 170 LKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQL-GVRGVVDWRWLLGPQITKTLKL 228
LKHL LDL N I+ P E ++++L ++L++N L ++ V L I++ +
Sbjct: 728 LKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIM 787
Query: 229 LDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPAT-IGRISTLRYFTISSNELQSLPC 287
L+ N + L + + + L DN + T + L+ +S N L +P
Sbjct: 788 RTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPS 847
Query: 288 SLMQ--CRLEYIDISSNKFDNKQNNSTS 313
Q L+++ +S N+ N +ST+
Sbjct: 848 KFFQNFSDLKHLFVSGNELANLSISSTA 875
Score = 35.5 bits (78), Expect = 0.014
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 23/210 (10%)
Query: 150 LQSLYLSGLKLCN-FRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGV 208
L+ LYL L N ++I LLK+L +DLS N I + L+ +++A N L
Sbjct: 573 LKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNIA-SLSECPKLNSINVACNLLSF 631
Query: 209 -------RGVVDWRWL----LGPQIT-KTLKLLDLTSNKL-GHLPKAIWKLEKLVTLKAN 255
+D+ + + P + L D++ KL G I L + T+K N
Sbjct: 632 YEYSNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVN 691
Query: 256 DNMISRLPATIGRISTLRYFTISSNELQSLPCSLMQCR-LEYIDISSNKFDNKQNNSTSD 314
N + + I + L+Y + ++ E+ + +L + + L ++D+ + NN
Sbjct: 692 YNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHA-------NNIKIF 744
Query: 315 QYSPWQFYVGSLVHLSAKIILKHKIHYASN 344
WQ +V+LS+ I+ K K+ A++
Sbjct: 745 PEEVWQVSSLKVVNLSSNILEKIKLPVATS 774
Score = 34.7 bits (76), Expect = 0.024
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 150 LQSLYLSGLKLCNFRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSEL 199
L++LY +G +L +F ++ L K L LD+S N ++ L E +L++L
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKL 928
Score = 32.3 bits (70), Expect = 0.13
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 153 LYLSGLKLCNFRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGVV 212
L+ + +K+ F ++ + L V++LS+N +EK+ +A +L +QL + +
Sbjct: 736 LHANNIKI--FPEEVWQVSSLKVVNLSSNILEKIKLP---VATSKKLTRTISQLKIMRTL 790
Query: 213 DWRWL--LGPQ--ITKTLKLLDLTSNKLGH-LPKAIWKLEKLVTLKANDNMISRLPAT-I 266
+ L Q + T++ L L N+LG+ A+ + L L + N ++ +P+
Sbjct: 791 SGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFF 850
Query: 267 GRISTLRYFTISSNELQSLP-CSLMQCRLEYIDISSNKFDNKQNN 310
S L++ +S NEL +L S Q LE + + N+ + N
Sbjct: 851 QNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFPKN 895
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 151 QSLYL--SGLKLCNFRRDILL-LKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQL 206
Q LYL S KL + +++ L L+ L LDLS NE+ ++P G + L L+LA+N++
Sbjct: 333 QLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
Score = 33.1 bits (72), Expect = 0.073
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 224 KTLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIG-RISTLRYFTISSNEL 282
++L LDL+ N+L +P A+ +L +L +L N I+ +S L+ +S N L
Sbjct: 356 QSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHL 415
Query: 283 QSLPCSLMQCRLEYIDISSN 302
SL LE +DI N
Sbjct: 416 TSLSGLENVPSLEKLDIRDN 435
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 36.3 bits (80), Expect = 0.008
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 146 LPRTLQSLYLSGLKLCNFRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQ 205
L L+ LY+S L +F I +L++L +LD+SNN I+ L G + NL EL +NN+
Sbjct: 213 LSHCLRELYVSHNGLTSFS-GIEVLENLEILDVSNNMIKHLSYLAG-LKNLVELWASNNE 270
Query: 206 L 206
L
Sbjct: 271 L 271
Score = 31.9 bits (69), Expect = 0.17
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 150 LQSLYLSGLKLCNFRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGVR 209
L+ L++ K+ F + L+ L++L + +N I + L EL++++N
Sbjct: 172 LEKLWVGKNKITKFE-NFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHN----- 225
Query: 210 GVVDWRWLLGPQITKTLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRI 269
G+ + G ++ + L++LD+++N + HL + L+ LV L A++N +S +
Sbjct: 226 GLTSFS---GIEVLENLEILDVSNNMIKHL-SYLAGLKNLVELWASNNELSSFQEIEDEL 281
Query: 270 STLR 273
S L+
Sbjct: 282 SGLK 285
Score = 26.6 bits (56), Expect = 6.4
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 165 RDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGVVDWRWLLGPQITK 224
R+I LK L L N I ++ G + L+ L L N++ V +D
Sbjct: 120 RNINHLKGLENLFFVQNRIRRIENLEG-LDRLTNLELGGNKIRVIENLD--------TLV 170
Query: 225 TLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQS 284
L+ L + NK+ KL+KL L N I++ LR +S N L S
Sbjct: 171 NLEKLWVGKNKITKFEN-FEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTS 229
Query: 285 LPCSLMQCRLEYIDISSN 302
+ LE +D+S+N
Sbjct: 230 FSGIEVLENLEILDVSNN 247
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 31.5 bits (68), Expect = 0.22
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 176 LDLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGVVDWRWLLGPQITKTLKLLDLTSNK 235
L+ N + L F + NL L ++ NQL L G L+ L + SN
Sbjct: 651 LNAVENRLSSLT-SFSNLLNLQYLDISYNQL--------EDLTGLSSLIHLRELKVDSNH 701
Query: 236 LGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQSLPCSLMQCRLE 295
L L I L+ L+ L A +N I L T + L + +NE++ + L
Sbjct: 702 LWSLD-GIQHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLM 760
Query: 296 YIDISSNKFDN 306
+ + +NK N
Sbjct: 761 VLQLDNNKLTN 771
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 144 KGLPRTLQSLYLSGLKLCNFRRDILLLKHL 173
+GLP +LQ++Y + + LC + L+ HL
Sbjct: 139 EGLPMSLQAVYSASIPLCGSLENYLVYAHL 168
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 155 LSGLKLCNFRRDILLLKHLAVLDLSNNEIEKLPPEFGRMANLSEL 199
L ++ N +L+LK L V ++S+ + PP MA+L EL
Sbjct: 843 LPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYEL 887
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 3.6
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 262 LPATIGRISTLRYFTIS---SNELQSLPCSLMQCRLEYIDISSN-KFDNKQNNSTSDQYS 317
+P++ ST FT S L S P +++ +Y +SSN N Q++S S S
Sbjct: 510 VPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSSNS 569
Query: 318 PWQFYVGSLVHLSAKII 334
+L H+S+ I+
Sbjct: 570 ------SALTHISSSIV 580
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 252 LKANDNMISRLPATIGRISTLRYFTISSNELQSLPCSLMQCRLEYIDISSNKFDNKQNNS 311
LKAND +++ + A + S ++ S S + R YI SS+ N Q +
Sbjct: 230 LKANDEIVTAIDAFKEKCSENSDYSSDSGSYSSSYSRHLDDRASYISRSSSGGSNAQRSE 289
Query: 312 TSDQYSPW 319
D +P+
Sbjct: 290 DLDVNNPF 297
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 6.4
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 225 TLKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRLPATIGRISTLRYFTISSNELQS 284
TL+ + + + PK IWKLEK ++ K +SR A + + + LQS
Sbjct: 137 TLRTAQILKQQALNQPKCIWKLEKHIS-KPKLLNLSRAQADLKGEEFFVQAVVRLHTLQS 195
Query: 285 LPCSLMQCRLEYIDISS 301
L ++E DI +
Sbjct: 196 LRTDKGSPKIEKPDIEN 212
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 373 INKEYDLKDYFRTVVFNNNLSVVEFECYFCS 403
I + + Y + NN SV+ F CY CS
Sbjct: 357 IGNIFPIVGYILLLACQNNKSVLYFACYLCS 387
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 56 KYRVKSIKQVFVKYINEGKSTIRFEEPPYDLCIKSESIQL 95
+YR K++K++ + ++NE K I + +D+ +S ++ L
Sbjct: 95 EYRCKTLKEMVLSHLNEKKRKIYEAKDMFDIGSESSTLLL 134
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 83 PYDLCIKSESIQLKCFMKLLRSCITGDEKAL--HLSPLSSLSVTAKNNAPVKLVISDRSQ 140
PY + ES +CF + +TG EK + LS L+S S ++ A K +++D
Sbjct: 9 PYSMTSDPESFGHECFTRRWGIILTGIEKDVSERLSKLASTSKDSEVVAQGKPLLNDLEA 68
Query: 141 F 141
F
Sbjct: 69 F 69
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 170 LKHLAVLDLSNNEIEKLPPEFGRMANLSELHLANNQLGVRGV 211
LK++ +L+ I++L P R+A L L + + VRGV
Sbjct: 396 LKYITTQELTEEGIQRLGPTVIRLAELEGLTAHADAVRVRGV 437
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 8.4
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 299 ISSNKFDNKQNNSTSDQYSPWQFYVGSLVHLSAKI-ILKHKIHYASNIIPWTLVEFLD 355
+S+ K +K+NN + P FY G LV +L+ H+ S TLVEF D
Sbjct: 1032 VSNLKIIDKKNNEPDENILPLHFY-GELVKSPQGCEVLESSGHFES--FMGTLVEFYD 1086
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 361 VCGAPVVNYTHSINKEYDLKDYFRTVVFNNNLSVVEFECYFCSPKCFLK 409
+CG PV Y Y L+D V N Y+CS CFLK
Sbjct: 82 LCGYPVCPYEPKQQTRYKLEDSGMKVYGGLN--------YYCSKDCFLK 122
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,560
Number of Sequences: 5004
Number of extensions: 85469
Number of successful extensions: 261
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 35
length of query: 410
length of database: 2,362,478
effective HSP length: 74
effective length of query: 336
effective length of database: 1,992,182
effective search space: 669373152
effective search space used: 669373152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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