GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001436-TA|BGIBMGA001436-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (410 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    40   3e-05
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   4.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   6.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   6.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 13/115 (11%)

Query: 148 RTLQSLYLSGLKLCNFR-RDILLLKHLAVLDLSNNEIEKLPP-EFGRMANLSELHLANNQ 205
           + ++ LY++G  + + + R    L +L +L L +N I +L   EF R+++L EL+L NN 
Sbjct: 818 KNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNL 877

Query: 206 LGVRGVVDWRWLLGPQITKTLKLLDLTSNKLGHLPKAIWKL---EKLVTLKANDN 257
           +G  G + +  L      ++L++L L+ N+L   P  +W++    +LV L    N
Sbjct: 878 IGFIGNLTFLPL------RSLEILRLSGNRLVTFP--VWQVTLNARLVELSLGSN 924



 Score = 34.7 bits (76), Expect = 0.001
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 22/153 (14%)

Query: 173 LAVLDLSNNEIEKLPPE-FGRMANLSELHLANNQLGVRG--------VVDWRWLLGPQIT 223
           L +LDL NN I+++    F  + NL  L L++N+L   G        V++   L G  I 
Sbjct: 361 LQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIA 420

Query: 224 KT----------LKLLDLTSNKLGHLPKAIWKLEKLVTLKANDNMISRL-PATIGRISTL 272
                       LK LDL+ N+L  +P A+  L  L TL   +N IS     +   +  L
Sbjct: 421 SIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQL 480

Query: 273 RYFTISSNELQSLPCSLM--QCRLEYIDISSNK 303
               +  N++ +L   ++     L+ ++++ NK
Sbjct: 481 TGLRLIGNDIGNLSRGMLWDLPNLQILNLARNK 513



 Score = 28.7 bits (61), Expect = 0.095
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 28/172 (16%)

Query: 173 LAVLDLSNNEIEKLPPE--FGRMANLSELHLANNQL------GVRGVVDWRWLLG----- 219
           + +LDLS NEI +L        +  L ELHL  N +       + G+   R         
Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273

Query: 220 ---PQ----ITKTLKLLDLTSNKLGHLPKAIW-KLEKLVTLKANDNMI--SRLPAT--IG 267
              P+     T+ L+ + L  N L  LPK I+ +LE+L+ L    N +   R+  T  +G
Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLG 333

Query: 268 RISTLRYFTISSNELQSLPCSLMQ--CRLEYIDISSNKFDNKQNNSTSDQYS 317
            I  L    +S N L  +   + +    L+ +D+ +N  D  ++N+    Y+
Sbjct: 334 LI-RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYN 384


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 38  SETEYFILHFSSLNKTGTKYRVKSIKQVFVKY 69
           +ET+  I+  S ++      ++  I Q F+KY
Sbjct: 95  NETDQLIVECSPISDANVHIKISKIFQCFMKY 126


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 149 TLQSLYLSGLKLCNFRRDILLL 170
           T +SLYLS + L +  RD++L+
Sbjct: 324 TRRSLYLSDIPLHDATRDLVLM 345


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 149 TLQSLYLSGLKLCNFRRDILLL 170
           T +SLYLS + L +  RD++L+
Sbjct: 324 TRRSLYLSDIPLHDATRDLVLM 345


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,601
Number of Sequences: 429
Number of extensions: 5256
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 410
length of database: 140,377
effective HSP length: 59
effective length of query: 351
effective length of database: 115,066
effective search space: 40388166
effective search space used: 40388166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)