Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001435-TA|BGIBMGA001435-PA|IPR000884|Thrombospondin,
type I, IPR010294|ADAM-TS Spacer 1
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   1.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    29   1.9  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   5.7  

>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 157 YFDQDKPCELQCVPRDGTDVEMLGGFVAD 185
           YFD+ +P   +CVP+D   +  L   +AD
Sbjct: 10  YFDKSRPRRFRCVPKDKAILNPLAKNIAD 38


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 250 SEVAIIPAGSRNV-KIQEKVSPGNYISIGSTKSRRMFLNGARNATLTEYFVAGAQAIYER 308
           SEV   P   R V ++ E +    Y+S   + S       AR ATL E     +Q +Y+R
Sbjct: 72  SEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDR 131

Query: 309 DRDWEKV 315
             + EK+
Sbjct: 132 VTNTEKM 138


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 322 AEDIKVYQRIFRGRHRNPGVTYQYTVDKQRLHKKHSYRLSEWT 364
           AE + V +  ++ R +     Y Y + + RLH+   +RLS+ T
Sbjct: 23  AEKLDVIEGKYQWREQKESDEYDYVLVESRLHELRRHRLSKNT 65


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,130
Number of Sequences: 5004
Number of extensions: 102481
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 3
length of query: 476
length of database: 2,362,478
effective HSP length: 75
effective length of query: 401
effective length of database: 1,987,178
effective search space: 796858378
effective search space used: 796858378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)