GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001435-TA|BGIBMGA001435-PA|IPR000884|Thrombospondin,
type I, IPR010294|ADAM-TS Spacer 1
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869     39   0.008
04_03_0565 + 17207582-17207811,17208026-17208320                       31   2.0  
04_03_0235 - 13111282-13111878                                         31   2.0  
09_04_0028 - 13928542-13929538,13929736-13929818                       30   3.5  
04_04_1434 - 33568258-33569415                                         30   3.5  
01_05_0739 + 24807181-24809121                                         30   3.5  
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117...    29   8.1  

>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
          Length = 400

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 181 GFVADGTPCRQAIGSRDMCISGV------CYKV---GCDWIVDSDVEEDACGVCGG-DGT 230
           G   DG    + + SRD+ ISGV       Y V   GC+ +   D    A G     DG 
Sbjct: 143 GGCPDGATSMKVLNSRDVVISGVKSVNSELYHVVIDGCEGVAVQDARIVAPGSSPNTDGI 202

Query: 231 ACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQE-KVSPGNYISIGSTKSRRMFLNGA 289
             ++   +   G + Q+G   +++ P G+ N++++     PG+ ISIGS   +     G 
Sbjct: 203 HVQSSSAVTITGASIQTGDDCISVGP-GTSNLRVEHVSCGPGHGISIGSL-GKESEEGGV 260

Query: 290 RNATLTEYFVAGAQAIYERDRDWEKVRISGPLAEDIKVYQRIFR 333
            N T++     G +    R + W +   SG     +     + R
Sbjct: 261 ENVTVSGAAFVGTENGL-RIKTWGRAARSGAYVRGVVFEHALMR 303


>04_03_0565 + 17207582-17207811,17208026-17208320
          Length = 174

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 401 RHQALMKQCRKPACVHWWVGAW 422
           +H    +QCR+P  +HWW   W
Sbjct: 99  QHGVWRRQCRRPVQLHWWGVTW 120


>04_03_0235 - 13111282-13111878
          Length = 198

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 393 QCYHIEPPRHQALMKQCRKPACVHWWVGAWNPCSKLCHMP 432
           +C H+ PP    +    R+PA  H W     P S+ CH P
Sbjct: 86  RCRHL-PPLAAVITTNRRQPAVDHIWSPLQTPTSRSCHHP 124


>09_04_0028 - 13928542-13929538,13929736-13929818
          Length = 359

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 207 VGCDWIVDSDVEEDACGVCGGDGTACKTV----QGIYTKGTTRQSGFSEVAII 255
           VG  + VDS    D+CG   GD   C T+     G    G T Q GFS+V ++
Sbjct: 89  VGVGYFVDSCRACDSCGK--GDENYCPTMVITSNGTDYGGATTQGGFSDVMVV 139


>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 54  MWCQNQTCVARTPSPAP-RDGGWGPWSEWSECSRTCGAGVSTQSRECNNPEPVNNGNYCI 112
           M+C N   V R        DG WGPW + +E +     G   Q+   +NP       Y +
Sbjct: 150 MYCVNTIFVVRLARAIQDEDGEWGPW-DLTEFN--VEEGAQLQASPISNPVLHGGLLYVL 206

Query: 113 GDRSRYKVCNTDPCPINEPSFREVQCSRHNNMPYKNETIDEWVPYFDQDKPCELQCVPRD 172
           G+  +  V   DPC  ++ +F+ V   +      +++ +D ++   DQ +   +  V   
Sbjct: 207 GEDGKLAV--YDPCN-HDDNFKVV--DKLKGFGIEHDRVDSYLFESDQGELMAV-LVGYT 260

Query: 173 GTDVEML 179
           GT V +L
Sbjct: 261 GTPVHVL 267


>01_05_0739 + 24807181-24809121
          Length = 646

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 397 IEPPRHQALMKQCRKPACVHWWVGAWNPC-----SKLCHMPG-EEVTKERSVYC 444
           I P +  ++ K C+ P CV    GA   C      + C  PG ++  + R++YC
Sbjct: 251 INPQQRNSITKNCQFPGCVKGARGASGHCIAHGGGRRCQKPGCQKGAEGRTIYC 304


>10_01_0097 -
           1171949-1172047,1172520-1172591,1172791-1172949,
           1172998-1173381,1173478-1175253,1175329-1175452,
           1176859-1177027,1177131-1177226,1177339-1177527,
           1177965-1179303
          Length = 1468

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 124 DPCPINEPSFREVQCSRHNNMPYKNETIDEWVPYFDQDK------PCELQCVPRDGTDVE 177
           D  P+N+ S    + +  NNM Y++ +++  +     DK        ELQCVP+     E
Sbjct: 403 DQKPVNKRSLVSKKQTPANNMQYQDTSVERLIREVTSDKFWHNPEEAELQCVPKSFESAE 462


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,846
Number of Sequences: 37544
Number of extensions: 799203
Number of successful extensions: 1412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 8
length of query: 476
length of database: 14,793,348
effective HSP length: 85
effective length of query: 391
effective length of database: 11,602,108
effective search space: 4536424228
effective search space used: 4536424228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)