GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001435-TA|BGIBMGA001435-PA|IPR000884|Thrombospondin,
type I, IPR010294|ADAM-TS Spacer 1
         (476 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.021
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   7.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.1 bits (67), Expect = 0.021
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 50   CGPDMWCQNQTCVARTPSPAPRDGGWGPWSEWSECSRTCGAGVSTQSRECNNPEPVNNGN 109
            C P    Q+Q  +   PSP  R G + P    +       A    QS+E N P+P   G 
Sbjct: 973  CQPGGVVQSQQPIMTDPSPFKR-GRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGK 1031

Query: 110  YCIGDRSRYKVCNTD 124
                 R +Y+  + D
Sbjct: 1032 GTRPKRGKYRNYDRD 1046


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 56 CQNQTCVARTPSPAPRDGGWGPWSEWSECSRTC 88
          CQ QT VA     A R+G W P +   +C   C
Sbjct: 44 CQTQTGVATVDIEAVRNGQW-PETRQLKCYMYC 75


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 75  WGPWSEWSECSRTCGA 90
           W  W++W E     GA
Sbjct: 696 WNKWNDWQETQNNYGA 711


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 75  WGPWSEWSECSRTCGA 90
           W  W++W E     GA
Sbjct: 696 WNKWNDWQETQNNYGA 711


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 75  WGPWSEWSECSRTCGA 90
           W  W++W E     GA
Sbjct: 696 WNKWNDWQETQNNYGA 711


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 100 NNPEPVNNGNYCIGDRSRYKVCNTDPCPINEP 131
           NN    NN NY    +  Y + N +  P+  P
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNIINIEQIPVPVP 367


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 52  PDMWCQNQTCVARTPSPAPRDGGWGPWSEWSECSRTCGAGVSTQSRECN 100
           P + C+ +TC ++T     +D G  P++   +     G  +   ++ CN
Sbjct: 431 PPIGCECKTCNSKTKCCFAQDDGLCPYTLKHKIRVPPGTPIYECNKRCN 479


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,137
Number of Sequences: 429
Number of extensions: 8589
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 476
length of database: 140,377
effective HSP length: 60
effective length of query: 416
effective length of database: 114,637
effective search space: 47688992
effective search space used: 47688992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)