GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001434-TA|BGIBMGA001434-PA|undefined
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    24   4.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   6.3  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 1   MSEFHDQDSLEIYLLTIMNMVSSLYMDPSIGNY 33
           M++ HD +++E+  +  +NM   +Y   SIG +
Sbjct: 858 MNKDHDSNAIELRNVITINMKDPIYSVCSIGKH 890


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 1   MSEFHDQDSLEIYLLTIMNMVSS 23
           M EF D D L ++L+ +++ + S
Sbjct: 562 MLEFEDADGLNVFLVEVLDFLMS 584


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,686
Number of Sequences: 5004
Number of extensions: 10935
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)